View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11098_low_4 (Length: 398)
Name: NF11098_low_4
Description: NF11098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11098_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 56161618 - 56161294
Alignment:
| Q |
20 |
tttaacaccatgtccgcaatggaattttgccttcctgtcccttttttgctactcattattcaaattcaaataataataaaaacatttagatcatgttatt |
119 |
Q |
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| T |
56161618 |
tttaacaccatgtccgcaatggaattttgctttcctggcccttttttgctactcaatattcaaattcaaataataa---aaacatttagatcatgttatt |
56161522 |
T |
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| Q |
120 |
aattaatgtagtgt--tgtcacacatgagttgtagacaaagtatgttaccttagattagattgggtagttccaatcaccaatttccttatatttagattc |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56161521 |
aattaatgtagtgtagtgtcacacatgagttgtagacaatggttgttaccttagattagattgggtagttccaatcaccaatttccttatatttagattc |
56161422 |
T |
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| Q |
218 |
cctacaaggtccacaatggcttcaccaacgttgtcaccctcaataagcatcatttctaccttaacctgtatatatgttacctttttcattattactacta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
56161421 |
cctacaaggtccacaatggcttcaccaacgttgtcaccctcaataagcatcatttctaccttaacctg----tatgttacccttttcattattactacta |
56161326 |
T |
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| Q |
318 |
gtactttaaatttactccatcaatacatatat |
349 |
Q |
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||||| ||||||||||||||||||||||||| |
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| T |
56161325 |
atacttcaaatttactccatcaatacatatat |
56161294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 55761673 - 55761779
Alignment:
| Q |
134 |
tgtcacacatgagttgtagacaaagtatgttaccttagattagattgggtagttccaatcaccaatttccttatatttagattccctacaaggtccacaa |
233 |
Q |
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| T |
55761673 |
tgtcacacttgacttgtagaccacgtgtggtaccttagattagattgggtagttccaatcaccaattt-cttttatttagactccctacacggtccacaa |
55761771 |
T |
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| Q |
234 |
tggcttca |
241 |
Q |
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|||||||| |
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| T |
55761772 |
tggcttca |
55761779 |
T |
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