View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11098_low_6 (Length: 381)
Name: NF11098_low_6
Description: NF11098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11098_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 7726984 - 7727343
Alignment:
| Q |
3 |
aggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcgaaaggg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||| | |
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| T |
7726984 |
aggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacattaaactgcgaaagag |
7727083 |
T |
|
| Q |
103 |
acggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtggggat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7727084 |
acggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtggggat |
7727183 |
T |
|
| Q |
203 |
cggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagttactttgggcatttcagcc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7727184 |
cggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccggttactttgggcatttcagcc |
7727283 |
T |
|
| Q |
303 |
aatgagaggaagttaagataagggaggtcgccaaactctgctggaagcgtacccgaaaga |
362 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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|
| T |
7727284 |
aatgagaggaagttaagatatgggaggtcgccaaactctgctggaagcgtaccagaaaga |
7727343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 7731144 - 7731503
Alignment:
| Q |
3 |
aggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcgaaaggg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||| |||||||||||||| |||||||||||||| | |
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|
| T |
7731144 |
aggcatttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacattaaactgcgaaagag |
7731243 |
T |
|
| Q |
103 |
acggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtggggat |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7731244 |
acggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtggggat |
7731343 |
T |
|
| Q |
203 |
cggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagttactttgggcatttcagcc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| || |
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|
| T |
7731344 |
cggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctaaaagagttagggattggcccagttactttcggcatttcggct |
7731443 |
T |
|
| Q |
303 |
aatgagaggaagttaagataagggaggtcgccaaactctgctggaagcgtacccgaaaga |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
7731444 |
aatgagaggaagttaagataagggaggtcgccaaactctactggaagcgtaccggaaaga |
7731503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 7739302 - 7739661
Alignment:
| Q |
3 |
aggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcgaaaggg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| | |
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|
| T |
7739302 |
aggcatttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgttaaactgggaaagag |
7739401 |
T |
|
| Q |
103 |
acggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtggggat |
202 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7739402 |
acggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggat |
7739501 |
T |
|
| Q |
203 |
cggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagttactttgggcatttcagcc |
302 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
7739502 |
cgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgctgaaagagttaggaattggcccagttactttgggcatttcggcc |
7739601 |
T |
|
| Q |
303 |
aatgagaggaagttaagataagggaggtcgccaaactctgctggaagcgtacccgaaaga |
362 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
7739602 |
aatgagaggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaaga |
7739661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 7713467 - 7713826
Alignment:
| Q |
3 |
aggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcgaaaggg |
102 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||||| || || ||||||||||| | |
|
|
| T |
7713467 |
aggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattgaactgcgaaagag |
7713566 |
T |
|
| Q |
103 |
acggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtggggat |
202 |
Q |
| |
|
|| ||| | | ||| |||||| |||||| |||||||||||| |||||| || ||||||| ||| || | || |||||||| ||| ||||| ||||| |
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|
| T |
7713567 |
actgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgcccagaaattcagggat |
7713666 |
T |
|
| Q |
203 |
cggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagttactttgggcatttcagcc |
302 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
7713667 |
tggcccactaaggctgttggagccaaggtcgagattttctagtcttttgagtttgctgaaagagttagggattggcccagttactttcggcatttcggcc |
7713766 |
T |
|
| Q |
303 |
aatgagaggaagttaagataagggaggtcgccaaactctgctggaagcgtacccgaaaga |
362 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
7713767 |
aatgagagcatgctaagataagggaggtcgccaaactccgctggaagtgtaccggaaaga |
7713826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 7699122 - 7699481
Alignment:
| Q |
3 |
aggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcgaaaggg |
102 |
Q |
| |
|
|||||||||||||| |||||| | |||| |||||| |||| |||| ||| || |||||||| |||||||||||||| || |||||||||||||| | |
|
|
| T |
7699122 |
aggcatttattatgctcaaacacattcttgttaaacttcttcaacccagcaggaattgcaccacagagctggttaaagctaacattaaactgcgaaagag |
7699221 |
T |
|
| Q |
103 |
acggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtggggat |
202 |
Q |
| |
|
| ||| | ||||| ||||| |||||| |||||||||| ||||||||| ||||||| ||||| || || |||||||| ||||||||| | |||||| |
|
|
| T |
7699222 |
attgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacctcctttaggcgcttcaacttgcctagaaaggaggggat |
7699321 |
T |
|
| Q |
203 |
cggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagttactttgggcatttcagcc |
302 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
7699322 |
tggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctaaaagagttagggattggcccagttactttcggcatttcggcc |
7699421 |
T |
|
| Q |
303 |
aatgagaggaagttaagataagggaggtcgccaaactctgctggaagcgtacccgaaaga |
362 |
Q |
| |
|
|||||||| | | ||||||||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
7699422 |
aatgagagcatgctaagataagggaggttgccaaactccgctggaagcgtaccggaaaga |
7699481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 285
Target Start/End: Complemental strand, 12908352 - 12908070
Alignment:
| Q |
3 |
aggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcgaaaggg |
102 |
Q |
| |
|
|||||||||||||| |||||| ||||||| | ||||| |||| |||||||| |||||||||||||| |||||| |||| || || ||||| || || | |
|
|
| T |
12908352 |
aggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactgggagagag |
12908253 |
T |
|
| Q |
103 |
acggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtggggat |
202 |
Q |
| |
|
|||||| || | ||| |||||| ||||||||||||||||||| ||||||||| ||||||| ||| | ||||| ||||||| ||||||| || |||||||| |
|
|
| T |
12908252 |
acggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtggggat |
12908153 |
T |
|
| Q |
203 |
cggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagtta |
285 |
Q |
| |
|
||| |||||||| ||||||| ||| | || || | | | ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12908152 |
cgggccactaaggttgttggagttaagtttgaggcttcgcaattttttgagtttgctgaaagagttagggattggcccagtta |
12908070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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