View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11098_low_8 (Length: 312)
Name: NF11098_low_8
Description: NF11098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11098_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 8280262 - 8279976
Alignment:
| Q |
19 |
cttgctctccttgaccgtgtgagaacaagttgagcttccctatctccttcagaaaaataacccatcc-ccaattctgaagaatcaaatccttgaaacaag |
117 |
Q |
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| T |
8280262 |
cttgttcttcttgaccgtgtgagaacaagttgagcttctctatctccttcagaaaaataacccatcctccaattctgaagaatcaaatccttgaaacaag |
8280163 |
T |
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| Q |
118 |
acacatgatagcaagaatttccatcataataagaccatccttgaacttttcccataacatgcttatgcttacatttagcacactttgaatgaaccctctt |
217 |
Q |
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| T |
8280162 |
acacatgatagcaagaatttccatcataataagaccatccttgaacttttcccataacatgcttatgcttacatttaccacactttgaatgaactctctt |
8280063 |
T |
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| Q |
218 |
agacaaattcaatgtcacgtttccattatcatccgaaatactatgttgcagcttcaaacaacatggatgaagatcatagtctgtgct |
304 |
Q |
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| T |
8280062 |
tgacaaattcaacgtcacgtttccgttatcatcagatatactatgttgcaacttcaaacaacatggatgaagatcatagtctgtgct |
8279976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 57 - 304
Target Start/End: Original strand, 8262165 - 8262407
Alignment:
| Q |
57 |
cctatctccttcagaaaaataacccatcc-ccaattctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccat |
155 |
Q |
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| T |
8262165 |
cctatctccttgagaaaaataaccccccctccagttctcaagtatcaaagccttgaaacaagacacatgataactagaatttccatcataataagaccac |
8262264 |
T |
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| Q |
156 |
ccttgaacttttcccataacatgcttatgcttacatttagcacactttgaatgaaccctcttagacaaattcaatgtcacgtttccattatcatccgaaa |
255 |
Q |
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| T |
8262265 |
ccttgaaaatttcccacaacatgcttatgcttacatttcacacactttgaacgagctttat------gatagagtgtcacgtttccactttcatctgaaa |
8262358 |
T |
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| Q |
256 |
tactatgttgcagcttcaaacaacatggatgaagatcatagtctgtgct |
304 |
Q |
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| T |
8262359 |
tactatgtttcagcttcaaacaacatggatgaagatcatagtctgtgct |
8262407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 8322772 - 8322652
Alignment:
| Q |
86 |
ccaattctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccatccttgaacttttcccataacatgcttatgc |
185 |
Q |
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| T |
8322772 |
ccaattatcaagtatcaaagccttgaaacaagacacatgataactagaatttccatcataataagaccacccttgaatatttcccacaacatgcttatgc |
8322673 |
T |
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| Q |
186 |
ttacatttagcacactttgaa |
206 |
Q |
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| T |
8322672 |
ttacattttacacactttgaa |
8322652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 8322612 - 8322569
Alignment:
| Q |
252 |
gaaatactatgttgcagcttcaaacaacatggatgaagatcata |
295 |
Q |
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| T |
8322612 |
gaaatactatcttgcagcttcaaacaacaaggatgaagatcata |
8322569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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