View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11099_high_10 (Length: 273)

Name: NF11099_high_10
Description: NF11099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11099_high_10
NF11099_high_10
[»] chr8 (2 HSPs)
chr8 (114-248)||(31875132-31875266)
chr8 (164-221)||(21217434-21217491)
[»] chr5 (2 HSPs)
chr5 (119-221)||(16490128-16490230)
chr5 (195-223)||(28443220-28443248)
[»] chr3 (2 HSPs)
chr3 (136-221)||(36337568-36337653)
chr3 (136-223)||(29582292-29582379)
[»] scaffold0376 (1 HSPs)
scaffold0376 (114-214)||(7226-7326)
[»] chr6 (1 HSPs)
chr6 (119-230)||(33555131-33555242)
[»] chr7 (3 HSPs)
chr7 (114-223)||(8920455-8920563)
chr7 (194-238)||(18500446-18500490)
chr7 (165-217)||(34877599-34877651)
[»] chr4 (4 HSPs)
chr4 (136-221)||(9073789-9073872)
chr4 (164-221)||(20182902-20182959)
chr4 (163-219)||(27060081-27060137)
chr4 (114-221)||(30452427-30452535)
[»] chr2 (1 HSPs)
chr2 (189-221)||(815691-815723)
[»] chr1 (3 HSPs)
chr1 (119-215)||(17493496-17493592)
chr1 (189-221)||(28639945-28639977)
chr1 (189-221)||(35990024-35990056)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 31875266 - 31875132
Alignment:
Q  114 gcattcaagactatttacagcaataaacttatcctatgttgtaaataccgtcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacac 213  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  31875266 gcatccaagactatttatagccataaacttatcctatgttgtaaataccgtcaaaagaaacgtttaggatgcctaaaccgaccaaaaatgcattaaacac 31875167  T
Q  214 accacaaatctttcaaatctttggtacaacgtcac 248  Q
    | |||||||||||||||||||||||||||||||||    
T  31875166 atcacaaatctttcaaatctttggtacaacgtcac 31875132  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 21217434 - 21217491
Alignment:
Q  164 tcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacacaccacaaa 221  Q
    ||||||||||||||||  ||| ||||||| |||||||||| |  ||||||||||||||    
T  21217434 tcaaaggaaacgtttataatgtctaaaccgaccaaaaatgtaccaaacacaccacaaa 21217491  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 16490230 - 16490128
Alignment:
Q  119 caagactatttacagcaataaacttatcctatgttgtaaataccgtcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacacaccac 218  Q
    |||||||||||| ||| ||||| ||||||||   ||||| |||  |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||    
T  16490230 caagactatttatagccataaaattatcctagactgtaactacattcaaaggatacgtttacgatgcctaaaccgaccaaaaatacattaaacacaccac 16490131  T
Q  219 aaa 221  Q
    |||    
T  16490130 aaa 16490128  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 28443220 - 28443248
Alignment:
Q  195 ccaaaaatgcattaaacacaccacaaatc 223  Q
    |||||||||||||||||||||||||||||    
T  28443220 ccaaaaatgcattaaacacaccacaaatc 28443248  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 36337568 - 36337653
Alignment:
Q  136 ataaacttatcctatgttgtaaataccgtcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacacaccacaaa 221  Q
    |||||| |||| || ||||||| ||| ||| |||||||||||||  |||| |||||| || |||||||||||||||||||||||||    
T  36337568 ataaacctatcataggttgtaactacagtcgaaggaaacgtttagaatgcataaaccgactaaaaatgcattaaacacaccacaaa 36337653  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 29582292 - 29582379
Alignment:
Q  136 ataaacttatcctatgttgtaaataccgtcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacacaccacaaatc 223  Q
    |||||| |||||||  |||||| ||| || ||||||||| ||||| |||    |||| ||| ||||||||||||||||||||||||||    
T  29582292 ataaacctatcctagattgtaactacagtaaaaggaaacatttacaatgttccaaccgaccgaaaatgcattaaacacaccacaaatc 29582379  T

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Target: scaffold0376 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 7226 - 7326
Alignment:
Q  114 gcattcaagactatttacagcaataaacttatcctatgttgtaaataccgtcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacac 213  Q
    |||| |||| ||||||| ||| |||||  |||||||  |||||| ||| |||||||| ||||||||| |||||||| || |||||| |||||||||||||    
T  7226 gcatgcaaggctatttatagccataaaactatcctagattgtaactacagtcaaagggaacgtttacaatgcctaagccgaccaaatatgcattaaacac 7325  T
Q  214 a 214  Q
    |    
T  7326 a 7326  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 33555242 - 33555131
Alignment:
Q  119 caagactatttacagcaataaacttatcctatgttgtaaataccgtcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacacaccac 218  Q
    |||| ||||||| ||| |||||| |||||||   ||||| ||| ||||||||| | |||||| |||| ||||   ||||||||||||||||| |||||||    
T  33555242 caaggctatttatagctataaacatatcctagactgtaactacagtcaaaggatatgtttacaatgcataaataaaccaaaaatgcattaaatacaccac 33555143  T
Q  219 aaatctttcaaa 230  Q
    ||| | ||||||    
T  33555142 aaaccgttcaaa 33555131  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 8920455 - 8920563
Alignment:
Q  114 gcattcaagactatttacagcaataaacttatcctatgttgtaaataccgtcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacac 213  Q
    |||| |||||||||||| ||  ||||| ||||||||  |||||| ||  |||||||||||| ||||| |||| |||||| ||||||||   ||||||||     
T  8920455 gcatgcaagactatttatagtcataaatttatcctagattgtaactatagtcaaaggaaacatttacaatgcataaaccgaccaaaaaaatattaaaca- 8920553  T
Q  214 accacaaatc 223  Q
    ||||||||||    
T  8920554 accacaaatc 8920563  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 18500446 - 18500490
Alignment:
Q  194 accaaaaatgcattaaacacaccacaaatctttcaaatctttggt 238  Q
    |||||||||||||||||||||||||||||| | |||| |||||||    
T  18500446 accaaaaatgcattaaacacaccacaaatcgtccaaacctttggt 18500490  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 34877651 - 34877599
Alignment:
Q  165 caaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacacacca 217  Q
    |||||||||||||||| ||| ||||||| ||||||||| || | |||||||||    
T  34877651 caaaggaaacgtttacaatgtctaaaccgaccaaaaatacaattaacacacca 34877599  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 9073789 - 9073872
Alignment:
Q  136 ataaacttatcctatgttgtaaataccgtcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacacaccacaaa 221  Q
    |||||| |||||||  ||||||| |  |||||||||||| ||||| ||| ||||| | ||||||||||||||  ||||||||||||    
T  9073789 ataaacatatcctagattgtaaacatagtcaaaggaaacatttacaatgtctaaatcgaccaaaaatgcatt--acacaccacaaa 9073872  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 20182902 - 20182959
Alignment:
Q  164 tcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacacaccacaaa 221  Q
    ||||| |||| |||||| ||| ||||||||| ||||||||||| ||| ||||||||||    
T  20182902 tcaaatgaaatgtttacaatgtctaaacctatcaaaaatgcataaaagacaccacaaa 20182959  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 27060137 - 27060081
Alignment:
Q  163 gtcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacacaccaca 219  Q
    |||||| ||||| ||||| ||| ||||||| |  |||||||||||||||||||||||    
T  27060137 gtcaaaagaaacatttacaatgtctaaaccgattaaaaatgcattaaacacaccaca 27060081  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 30452427 - 30452535
Alignment:
Q  114 gcattcaagactatttacagcaataaacttatcctatgttgtaaataccgtcaaaggaaacgtttacgatgcct-aaacctaccaaaaatgcattaaaca 212  Q
    |||| |||| |||||||| |  ||||||||||| ||  |||||| ||| || ||||||||||||||| |||| | ||||| ||| ||||| ||||||| |    
T  30452427 gcatgcaagtctatttaccgttataaacttatcttagattgtaactacagttaaaggaaacgtttacaatgcataaaaccaacccaaaatacattaaata 30452526  T
Q  213 caccacaaa 221  Q
    || ||||||    
T  30452527 caacacaaa 30452535  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 815691 - 815723
Alignment:
Q  189 aacctaccaaaaatgcattaaacacaccacaaa 221  Q
    |||| ||||||||||||||||||||||||||||    
T  815691 aaccgaccaaaaatgcattaaacacaccacaaa 815723  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 17493496 - 17493592
Alignment:
Q  119 caagactatttacagcaataaacttatcctatgttgtaaataccgtcaaaggaaacgtttacgatgcctaaacctaccaaaaatgcattaaacacac 215  Q
    |||| ||||||| ||| |||||| |||||||   ||||| ||| |||| || |||| ||| | |||||||||||||||||||||   ||||||||||    
T  17493496 caaggctatttatagccataaacctatcctacactgtaactacagtcatagtaaacatttgcaatgcctaaacctaccaaaaatatgttaaacacac 17493592  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 28639977 - 28639945
Alignment:
Q  189 aacctaccaaaaatgcattaaacacaccacaaa 221  Q
    |||| ||||||||||||||||||||||||||||    
T  28639977 aaccgaccaaaaatgcattaaacacaccacaaa 28639945  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 35990056 - 35990024
Alignment:
Q  189 aacctaccaaaaatgcattaaacacaccacaaa 221  Q
    |||| ||||||||||||||||||||||||||||    
T  35990056 aaccgaccaaaaatgcattaaacacaccacaaa 35990024  T

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