View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11099_high_11 (Length: 268)

Name: NF11099_high_11
Description: NF11099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11099_high_11
NF11099_high_11
[»] chr1 (27 HSPs)
chr1 (42-251)||(776916-777129)
chr1 (156-251)||(45644624-45644719)
chr1 (156-251)||(50169479-50169574)
chr1 (156-251)||(28265835-28265931)
chr1 (156-251)||(50167457-50167552)
chr1 (85-167)||(28265941-28266023)
chr1 (36-121)||(28266008-28266093)
chr1 (38-121)||(40816356-40816438)
chr1 (104-167)||(50167562-50167625)
chr1 (162-251)||(13138243-13138334)
chr1 (1-40)||(776855-776894)
chr1 (83-158)||(45644738-45644813)
chr1 (104-167)||(50169584-50169647)
chr1 (182-238)||(8871342-8871398)
chr1 (156-212)||(19073270-19073326)
chr1 (156-212)||(19121160-19121216)
chr1 (157-213)||(47703636-47703692)
chr1 (102-167)||(8871433-8871498)
chr1 (156-213)||(40816516-40816573)
chr1 (1-40)||(8871619-8871658)
chr1 (83-122)||(45644795-45644834)
chr1 (1-40)||(45644851-45644890)
chr1 (1-40)||(50167690-50167729)
chr1 (42-100)||(50169630-50169689)
chr1 (203-251)||(23555534-23555583)
chr1 (36-121)||(47255985-47256069)
chr1 (156-192)||(47255879-47255915)
[»] chr8 (19 HSPs)
chr8 (36-251)||(40320748-40320966)
chr8 (1-212)||(40320692-40320924)
chr8 (36-121)||(5688913-5688998)
chr8 (156-251)||(5689075-5689170)
chr8 (83-167)||(5688981-5689065)
chr8 (156-247)||(18141625-18141715)
chr8 (37-117)||(8149937-8150017)
chr8 (42-118)||(18141489-18141565)
chr8 (156-234)||(26402928-26403006)
chr8 (156-213)||(6127563-6127620)
chr8 (156-213)||(9765553-9765610)
chr8 (159-251)||(30291400-30291491)
chr8 (1-40)||(5688857-5688896)
chr8 (183-249)||(7597433-7597498)
chr8 (183-240)||(8863354-8863410)
chr8 (77-118)||(9765452-9765493)
chr8 (184-251)||(29796592-29796658)
chr8 (204-250)||(1292733-1292779)
chr8 (1-38)||(30291224-30291261)
[»] chr3 (19 HSPs)
chr3 (36-167)||(28074063-28074194)
chr3 (83-174)||(31314246-31314337)
chr3 (159-251)||(29196670-29196761)
chr3 (36-118)||(9666891-9666973)
chr3 (36-139)||(44700893-44700997)
chr3 (36-115)||(29196858-29196937)
chr3 (156-251)||(44700761-44700855)
chr3 (50-121)||(31314192-31314263)
chr3 (156-234)||(3715690-3715769)
chr3 (156-232)||(9666756-9666831)
chr3 (156-212)||(47649911-47649967)
chr3 (185-251)||(32890936-32891002)
chr3 (36-115)||(25796280-25796359)
chr3 (1-40)||(29196954-29196993)
chr3 (1-40)||(31314127-31314166)
chr3 (183-250)||(40519468-40519535)
chr3 (77-115)||(3715549-3715587)
chr3 (182-251)||(5373054-5373122)
chr3 (83-115)||(47650028-47650060)
[»] chr2 (14 HSPs)
chr2 (3-251)||(11066917-11067191)
chr2 (36-167)||(36773212-36773343)
chr2 (36-251)||(33162719-33162934)
chr2 (156-212)||(31056385-31056441)
chr2 (156-212)||(34682032-34682088)
chr2 (170-251)||(36773367-36773448)
chr2 (156-212)||(42269711-42269767)
chr2 (104-167)||(26352264-26352327)
chr2 (156-192)||(17450178-17450214)
chr2 (1-40)||(33162951-33162990)
chr2 (36-115)||(34681849-34681928)
chr2 (150-234)||(2837722-2837807)
chr2 (183-240)||(28671785-28671842)
chr2 (156-208)||(8040411-8040463)
[»] chr4 (13 HSPs)
chr4 (36-251)||(45687465-45687701)
chr4 (156-251)||(46147624-46147719)
chr4 (42-118)||(36463825-36463901)
chr4 (1-118)||(46147779-46147901)
chr4 (156-240)||(36463682-36463765)
chr4 (157-238)||(52467637-52467717)
chr4 (156-213)||(3793780-3793837)
chr4 (36-93)||(52467782-52467839)
chr4 (83-178)||(24334449-24334543)
chr4 (1-40)||(45687718-45687757)
chr4 (194-251)||(37755194-37755251)
chr4 (186-251)||(44968099-44968164)
chr4 (183-250)||(21704098-21704166)
[»] chr7 (15 HSPs)
chr7 (156-251)||(12098141-12098236)
chr7 (156-251)||(36146691-36146786)
chr7 (36-251)||(41317716-41317952)
chr7 (156-251)||(8153134-8153228)
chr7 (91-150)||(36146813-36146872)
chr7 (156-251)||(24526166-24526260)
chr7 (150-251)||(31105662-31105763)
chr7 (1-40)||(24526441-24526480)
chr7 (1-40)||(41317987-41318026)
chr7 (109-167)||(8153068-8153124)
chr7 (1-40)||(12098321-12098360)
chr7 (156-220)||(29160140-29160201)
chr7 (77-121)||(22269439-22269483)
chr7 (36-107)||(24526352-24526424)
chr7 (42-93)||(12098247-12098298)
[»] chr6 (5 HSPs)
chr6 (83-167)||(3039288-3039372)
chr6 (156-240)||(3039195-3039278)
chr6 (157-212)||(21801044-21801099)
chr6 (77-121)||(3039355-3039399)
chr6 (36-104)||(21800937-21801005)
[»] scaffold0148 (1 HSPs)
scaffold0148 (156-213)||(11071-11128)
[»] chr5 (6 HSPs)
chr5 (77-118)||(10282208-10282249)
chr5 (156-197)||(10282107-10282148)
chr5 (77-107)||(3881241-3881271)
chr5 (36-102)||(28277759-28277824)
chr5 (186-251)||(5007385-5007450)
chr5 (203-251)||(16451932-16451980)
[»] scaffold0477 (1 HSPs)
scaffold0477 (156-197)||(5657-5698)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 776916 - 777129
Alignment:
Q  42 acgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatattgtatt 141  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||| |    
T  776916 acgattgaatggttcagtttttga-ttgccattgaaaaaatcgtggcacgacccaggaggaacgtggcacgatgcaggagataagatcaagtattgtact 777014  T
Q  142 gctaccaactccatcgtggcacgat--gctgcgta---tttccgaacactatttaatgcttcattcttca-ttttttgggaagagcttcaagagagaaaa 235  Q
    |||||||||||||||||||||||||  ||| || |   || | ||||||||||||| | ||||||||||| |||||||| ||||||||||||||||| ||    
T  777015 gctaccaactccatcgtggcacgatgggct-cgaaacgttcctgaacactatttaaggattcattcttcatttttttggtaagagcttcaagagagagaa 777113  T
Q  236 acttgaaaaatcaaag 251  Q
    ||| |  |||||||||    
T  777114 actagggaaatcaaag 777129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 45644719 - 45644624
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    |||||||||||| |||||||| | ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  45644719 cgtggcacgatgttgcgtattcctgaacactatttaaggctttattcttcattttttgggaagagcttcaagagagaaaaactagggaaatcaaag 45644624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 50169574 - 50169479
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |  |||||||||    
T  50169574 cgtggcacgatgctgcgtattcctgaacactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaag 50169479  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 28265931 - 28265835
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatt-taatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |  |||||||||    
T  28265931 cgtggcacgatgctgcgtattcctgaacactattataaggcttcattcttcattttttgggaagagcttcaagagagagaaactagggaaatcaaag 28265835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 50167552 - 50167457
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    |||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |  |||||||||    
T  50167552 cgtggcacgatgcttcgtattcctgaacactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaag 50167457  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 28266023 - 28265941
Alignment:
Q  85 tggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatg 167  Q
    ||||||||| |||||| || ||| ||| |||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  28266023 tggcacgatgcaggagcaatgtggcaccatgcaggagataagatcaagtattgtactgctaccaactccatcgtggcacgatg 28265941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 28266093 - 28266008
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggag 121  Q
    ||||| |||||||||||||| || ||||| ||||||| || |||||||||||||||||||| ||||||| || |||||||||||||    
T  28266093 cgtggcacgattgaatggttcagattttgggttgccactggaaaaatcgtggcacgatccaagaggaacatggcacgatgcaggag 28266008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 40816356 - 40816438
Alignment:
Q  38 tggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggag 121  Q
    ||||||||||| |||||| || ||| |  ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  40816356 tggtacgattggatggttcaggtttggt-ttgtcattggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggag 40816438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 50167625 - 50167562
Alignment:
Q  104 cgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatg 167  Q
    |||| ||||||||||||||||||||||| || | || |||||||||||||||||||||||||||    
T  50167625 cgtggcacgatgcaggagataagattaagtactatactgctaccaactccatcgtggcacgatg 50167562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 13138334 - 13138243
Alignment:
Q  162 acgatgctgcgtatttccgaacactatttaat--gcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||||||| | ||| |||||||||||  |  ||||||||||| ||||||  |||||||||||||||||||||||||||  |||||||||    
T  13138334 acgatgctgcgaaattctgaacactattttttaggcttcattcttaatttttgaggaagagcttcaagagagaaaaacttgggaaatcaaag 13138243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 776855 - 776894
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  776855 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 776894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 45644813 - 45644738
Alignment:
Q  83 cgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgt 158  Q
    |||||| |||| |||||| |||||| ||||||||||||||||||| ||| || |||| |||| |||||||||||||    
T  45644813 cgtggctcgatgcaggagaaacgtggcacgatgcaggagataagagtaagtactgtactgctgccaactccatcgt 45644738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 50169647 - 50169584
Alignment:
Q  104 cgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatg 167  Q
    |||| |||||||||||||||||||| || ||||||| |||||| | ||||||||||||||||||    
T  50169647 cgtggcacgatgcaggagataagatcaagtattgtactgctacaacctccatcgtggcacgatg 50169584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 8871398 - 8871342
Alignment:
Q  182 acactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaact 238  Q
    ||||||||||| |||||||||||||| |||| || |||||||||||||||| |||||    
T  8871398 acactatttaaggcttcattcttcatgtttttggtagagcttcaagagagagaaact 8871342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 19073326 - 19073270
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcatttttt 212  Q
    |||||||||||| |||||||| | ||||||||||||| ||||| |||||||||||||    
T  19073326 cgtggcacgatgttgcgtattcctgaacactatttaaggcttctttcttcatttttt 19073270  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 19121216 - 19121160
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcatttttt 212  Q
    |||||||||||| |||||||| | ||||||||||||| ||||| |||||||||||||    
T  19121216 cgtggcacgatgttgcgtattcctgaacactatttaaggcttctttcttcatttttt 19121160  T

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Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 47703636 - 47703692
Alignment:
Q  157 gtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttg 213  Q
    ||||||||||| |||||||||| ||||||||||||| ||||| |||||||| |||||    
T  47703636 gtggcacgatgttgcgtatttctgaacactatttaaggcttctttcttcatcttttg 47703692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 8871498 - 8871433
Alignment:
Q  102 aacgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatg 167  Q
    |||||| |||||| ||||||||||||| || ||||||| ||| |||||||||| ||||||| ||||    
T  8871498 aacgtggcacgatccaggagataagatcaagtattgtactgccaccaactccaacgtggcatgatg 8871433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 40816516 - 40816573
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttg 213  Q
    ||||||||||||||||||||| | || |||||||||| ||||| |||||||| |||||    
T  40816516 cgtggcacgatgctgcgtattcctgatcactatttaaggcttctttcttcatcttttg 40816573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8871658 - 8871619
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  8871658 tgtgtctcaaaattgatgttgaagtctggaaaaatcgtgg 8871619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 45644834 - 45644795
Alignment:
Q  83 cgtggcacgatccaggaggaacgtgacacgatgcaggaga 122  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  45644834 cgtggcacgatccaggaggaacgtggctcgatgcaggaga 45644795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45644890 - 45644851
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  45644890 tgtgtctcaaaattgaagttgaagcctggaaaaatcgtgg 45644851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 50167729 - 50167690
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  50167729 tgtgtctcaaaattaatgttgaagtttggaaaaatcgtgg 50167690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 50169689 - 50169630
Alignment:
Q  42 acgattgaatggtttagttttt-gagttgccattgaaaaaatcgtggcacgatccaggag 100  Q
    |||||||||||||| ||||||| | ||||||| || ||||||||||||||||| ||||||    
T  50169689 acgattgaatggttcagttttttgggttgccactgtaaaaatcgtggcacgatgcaggag 50169630  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 23555583 - 23555534
Alignment:
Q  203 ttcattttttggga-agagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  23555583 ttcattttttgagagagagcttcaagagagaaaaacttgggaaatcaaag 23555534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 47256069 - 47255985
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggag 121  Q
    ||||| ||||||| |||||| || ||| |||||| || || |||||||||||||||||| |||||||  ||| |||||| ||||||    
T  47256069 cgtggcacgattggatggttcaggttt-gagttgtcactggaaaaatcgtggcacgatctaggaggagtgtggcacgattcaggag 47255985  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 47255915 - 47255879
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaa 192  Q
    |||||||||||||||||| |||| |||||||||||||    
T  47255915 cgtggcacgatgctgcgtttttctgaacactatttaa 47255879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 40320748 - 40320966
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatat 135  Q
    ||||| |||||||||||||| |||||||| ||||||| || |||||||||||||| ||  |||||||||||| |||||||||||||||||||  || |||    
T  40320748 cgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacaatgtaggaggaacgtggcacgatgcaggagataagagcaagtat 40320847  T
Q  136 tgtattgctaccaactccatcgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttg---ggaagagcttcaagagaga 232  Q
    |||| ||||||||||||||||||||||||||  |||||||| | ||||||||| ||| |||||||||||||||||||    | ||||| |||||||||||    
T  40320848 tgtactgctaccaactccatcgtggcacgatagtgcgtattcctgaacactatctaaggcttcattcttcattttttttttgtaagagtttcaagagaga 40320947  T
Q  233 aaaacttgaaaaatcaaag 251  Q
     ||||| |  |||||||||    
T  40320948 gaaactagggaaatcaaag 40320966  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 40320692 - 40320924
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaat---------------------cgtggtacgattgaatggtttagtttttgagttgccattgaaaa 79  Q
    ||||||| |||||||||||||||||||||||||||                     ||||| |||||||||||||| |||||||| ||||||| || |||    
T  40320692 tgtgtcttaaaattgaagttgaagtttggaaaaatcgtggcatgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttgccactggaaa 40320791  T
Q  80 aatcgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatgctgcgtatttcc 179  Q
    ||||||||||| ||  |||||||||||| |||||||||||||||||||  || ||||||| ||||||||||||||||||||||||||  |||||||| |     
T  40320792 aatcgtggcacaatgtaggaggaacgtggcacgatgcaggagataagagcaagtattgtactgctaccaactccatcgtggcacgatagtgcgtattcct 40320891  T
Q  180 gaacactatttaatgcttcattcttcatttttt 212  Q
    ||||||||| ||| |||||||||||||||||||    
T  40320892 gaacactatctaaggcttcattcttcatttttt 40320924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 5688913 - 5688998
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggag 121  Q
    ||||| |||||||||||||| |||||||  |||| || |||||||||||||||||||||||||||||||||| |||||||||||||    
T  5688913 cgtggcacgattgaatggttcagttttttggttgtcactgaaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggag 5688998  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 5689075 - 5689170
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    |||||||||||| || ||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |  |||||||||    
T  5689075 cgtggcacgatgttgggtattcctgaacactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaag 5689170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 5688981 - 5689065
Alignment:
Q  83 cgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatg 167  Q
    ||||||||||| |||||| |||||| |||| ||||||||||||||| || || |||| |||||||||||||||||||||||||||    
T  5688981 cgtggcacgatgcaggagcaacgtggcacggtgcaggagataagatcaagtactgtactgctaccaactccatcgtggcacgatg 5689065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 18141625 - 18141715
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatc 247  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||| |||||| | |||||||||||||||| ||||| | ||||||    
T  18141625 cgtggcacgatgctgcgtattcctgaacactatttaaggcttcattcttca-tttttgagtagagcttcaagagagagaaactaggaaaatc 18141715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 8150017 - 8149937
Alignment:
Q  37 gtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgca 117  Q
    |||| |||||||||||||| |||||||| ||||||| |  |||| ||||||||||||| |||||||| |||||||||||||    
T  8150017 gtggcacgattgaatggttcagtttttgggttgccactagaaaattcgtggcacgatctaggaggaatgtgacacgatgca 8149937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 18141489 - 18141565
Alignment:
Q  42 acgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcag 118  Q
    ||||||||| |||| |||||||| ||||||| || ||||||  ||||||||||||||||||||||| ||||||||||    
T  18141489 acgattgaacggttcagtttttgggttgccactggaaaaattatggcacgatccaggaggaacgtggcacgatgcag 18141565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 26402928 - 26403006
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaa 234  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||| ||  |||||  |||||||||    
T  26402928 cgtggcacgatgctgcgtatttctgaacactatttaaggcttctttcttcatcttttgtgagtagctttgagagagaaa 26403006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 6127620 - 6127563
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttg 213  Q
    ||||||||||||||||||||||| |||||||||||||  |||| |||||||| |||||    
T  6127620 cgtggcacgatgctgcgtatttctgaacactatttaagacttctttcttcatcttttg 6127563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 9765553 - 9765610
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttg 213  Q
    ||||||||||||||||||||| | ||||||||||||| ||||| || |||||||||||    
T  9765553 cgtggcacgatgctgcgtattcctgaacactatttaaggcttctttattcattttttg 9765610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 30291400 - 30291491
Alignment:
Q  159 ggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    |||| |||| |||||||| | ||||||||||||| | |||||||||||||||||  | |||||||||||| ||| ||||| | ||||||||||    
T  30291400 ggcatgatgttgcgtattcctgaacactatttaaggtttcattcttcatttttt-agtagagcttcaagaaagagaaactaggaaaatcaaag 30291491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5688857 - 5688896
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  5688857 tgtgtctcaaaattgatgttgaagtttggaaaaatcgtgg 5688896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 7597433 - 7597498
Alignment:
Q  183 cactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaa 249  Q
    |||||| ||| |||||||||||||| ||||| |||| ||||||||||||| |||||||| |||||||    
T  7597433 cactatataaggcttcattcttcatgttttgtgaag-gcttcaagagagataaacttgagaaatcaa 7597498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 8863354 - 8863410
Alignment:
Q  183 cactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttg 240  Q
    |||||| ||| |||||||||||||| |||||||  |||||||||||||||||||||||    
T  8863354 cactatataaggcttcattcttcatgttttgggt-gagcttcaagagagaaaaacttg 8863410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 9765452 - 9765493
Alignment:
Q  77 aaaaatcgtggcacgatccaggaggaacgtgacacgatgcag 118  Q
    ||||||| ||||||||||||||||||||||| ||||||||||    
T  9765452 aaaaatcatggcacgatccaggaggaacgtggcacgatgcag 9765493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 29796658 - 29796592
Alignment:
Q  184 actatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||| ||| |||||||||||||| ||||| | ||| |||||||||||| |||||||| |||||||||    
T  29796658 actatataaggcttcattcttcatgttttgaggaga-cttcaagagagagaaacttgagaaatcaaag 29796592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 1292779 - 1292733
Alignment:
Q  204 tcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaa 250  Q
    |||||||||| | ||||||||||||||| |||||||| |||||||||    
T  1292779 tcattttttgtggagagcttcaagagaggaaaacttggaaaatcaaa 1292733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30291224 - 30291261
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgt 38  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  30291224 tgtgtctcaaaattgatgttgaagtctggaaaaatcgt 30291261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 28074063 - 28074194
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatat 135  Q
    ||||| |||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  28074063 cgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggagataagatcaagtat 28074162  T
Q  136 tgtattgctaccaactccatcgtggcacgatg 167  Q
    |||| |||||||||||||||||||||||||||    
T  28074163 tgtactgctaccaactccatcgtggcacgatg 28074194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 31314246 - 31314337
Alignment:
Q  83 cgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatgctgcgta 174  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||||||    
T  31314246 cgtggcacgatgcaggaggaacgtggcacgatgcaggagataagatcaagtattgtactgctaccaactccatcatggcacgatgctgcgta 31314337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 29196761 - 29196670
Alignment:
Q  159 ggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| | |||||| |||||||||||||||||  |||||||||    
T  29196761 ggcacgatgctacgtatttctgaacactatttaaggcttcattcttcattttttgag-agagctacaagagagaaaaacttgggaaatcaaag 29196670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 9666973 - 9666891
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcag 118  Q
    ||||| ||||||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||||    
T  9666973 cgtggcacgattgaagggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcag 9666891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 44700997 - 44700893
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcagg-agataagattaaata 134  Q
    ||||| |||||||||||||| |||||||| ||| ||| || ||||||||||||||||||||||||||||||  |||||||||||  ||||||||  ||||    
T  44700997 cgtggcacgattgaatggttcagtttttgggttaccactggaaaaatcgtggcacgatccaggaggaacgtagcacgatgcaggcggataagatataata 44700898  T
Q  135 ttgta 139  Q
    |||||    
T  44700897 ttgta 44700893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 29196937 - 29196858
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatg 115  Q
    ||||| |||||||||||||| | |||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||    
T  29196937 cgtggcacgattgaatggttcaatttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 29196858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 44700855 - 44700761
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||| ||||||||||||| | ||||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||| |  |||||||||    
T  44700855 cgtggcatgatgctgcgtattcctgaacactatttaaggcttcattcttcat-ttttgagaagagcttcaagagagagaaactagggaaatcaaag 44700761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 31314192 - 31314263
Alignment:
Q  50 atggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggag 121  Q
    |||||| |||||||| || |||| || |||||||||||||||||||| |||||||||| |||||||||||||    
T  31314192 atggttcagtttttgggtcgccactggaaaaatcgtggcacgatccaagaggaacgtggcacgatgcaggag 31314263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 3715690 - 3715769
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttc-attttttgggaagagcttcaagagagaaa 234  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||| |||||| |||||||||  |||||||  |||||||||    
T  3715690 cgtggcacgatactgcgtatttctgaacactatttaaggcttctttcttcaattttttggagagagctttgagagagaaa 3715769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 9666831 - 9666756
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagaga 232  Q
    |||||||||||| ||||||||   |||||||||||||  ||||||||||||| ||||| | ||||||||||||||||    
T  9666831 cgtggcacgatgttgcgtattcgtgaacactatttaagacttcattcttcat-ttttgagtagagcttcaagagaga 9666756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 47649967 - 47649911
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcatttttt 212  Q
    ||||||||||||||||||||||| ||||||||||||| ||||  || ||||||||||    
T  47649967 cgtggcacgatgctgcgtatttctgaacactatttaaggcttattttttcatttttt 47649911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 32890936 - 32891002
Alignment:
Q  185 ctatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    |||||||| | ||||||||||||||||| | |||||||||||||||| |||| ||| ||| ||||||    
T  32890936 ctatttaaggtttcattcttcattttttagaaagagcttcaagagaggaaaatttggaaagtcaaag 32891002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 25796359 - 25796280
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatg 115  Q
    ||||| ||||||| ||| || || |||||  ||| || || |||||||||| |||||||||||||||||||| |||||||    
T  25796359 cgtggcacgattggatgattcaggttttggtttgtcactggaaaaatcgtgacacgatccaggaggaacgtggcacgatg 25796280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29196993 - 29196954
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  29196993 tgtgtctcaaaattgatgttgaagtttgggaaaatcgtgg 29196954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31314127 - 31314166
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  31314127 tgtgtctcaaaattgatgttgaagtttgaaaaaatcgtgg 31314166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 40519535 - 40519468
Alignment:
Q  183 cactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaa 250  Q
    |||||| ||| ||||||||| |||| | ||| | |||||||||||||||| |||||||| ||||||||    
T  40519535 cactatataaggcttcattcatcatgtattgagtagagcttcaagagagagaaacttgagaaatcaaa 40519468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 3715549 - 3715587
Alignment:
Q  77 aaaaatcgtggcacgatccaggaggaacgtgacacgatg 115  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  3715549 aaaaattgtggcacgatccaggaggaacgtgacatgatg 3715587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 5373054 - 5373122
Alignment:
Q  182 acactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||| |||  ||||||| ||||| |||| || |||| ||||||||||| ||||||||||||||||||    
T  5373054 acactatctaagacttcatt-ttcatatttttggtagagtttcaagagagagaaacttgaaaaatcaaag 5373122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 47650060 - 47650028
Alignment:
Q  83 cgtggcacgatccaggaggaacgtgacacgatg 115  Q
    ||||||||||||||||||||||||| |||||||    
T  47650060 cgtggcacgatccaggaggaacgtggcacgatg 47650028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 11066917 - 11067191
Alignment:
Q  3 tgtctcaaaattgaagttgaagtttggaaaaat-----cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatc--- 94  Q
    |||||||||||||| ||||||||||||||||||     ||||| ||||||||| |||| |||||||| ||||||| |||||||||||||||||||||       
T  11066917 tgtctcaaaattgatgttgaagtttggaaaaatgcaaacgtggcacgattgaagggttcagtttttgggttgccactgaaaaaatcgtggcacgatctag 11067016  T
Q  95 ------------------caggaggaacgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatgctgcgtatt 176  Q
                      ||||||||||||||||||||||| |||||||||  || || |||| ||||||||||||||||||||||| ||||||||||||    
T  11067017 gaggaacgtgatacgatgcaggaggaacgtgacacgatgcatgagataagagcaagtactgtactgctaccaactccatcgtggcacaatgctgcgtatt 11067116  T
Q  177 tccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
     |||||||||||||||  ||||||||||||||||||| | || ||||||||||||| ||||| |  |||||||||    
T  11067117 cccgaacactatttaaaacttcattcttcattttttgaggagggcttcaagagagagaaactagggaaatcaaag 11067191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 36773212 - 36773343
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatat 135  Q
    ||||| |||||||||||||| |||||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||     
T  36773212 cgtggcacgattgaatggttcagtttttgggttgccactggaaaaattgtggcacgatccaggaggaacgtgacacgatgcaggagataagatcaagtac 36773311  T
Q  136 tgtattgctaccaactccatcgtggcacgatg 167  Q
    | || |||||||||||||||||||||||||||    
T  36773312 tttactgctaccaactccatcgtggcacgatg 36773343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 33162934 - 33162719
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcag-gagataagattaaata 134  Q
    ||||| |||||||||||||| |||||||| ||||||| || |||||||||||||||||||||||||||| || ||||||||||   |||||| |  |  |    
T  33162934 cgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacatggcacgatgcagacggataaggtatagca 33162835  T
Q  135 ttgtattgctaccaactccatcgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaa 234  Q
    ||||| |   |||  |||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||  | |||  ||||||||||| |    
T  33162834 ttgtactatcacccgctccatcgtggcacgatgctgcatattcctgaacactatttaaggcttcattcttcatttttt-agtagaatttcaagagagaga 33162736  T
Q  235 aacttgaaaaatcaaag 251  Q
    ||||||  |||||||||    
T  33162735 aacttgggaaatcaaag 33162719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 31056441 - 31056385
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcatttttt 212  Q
    |||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||    
T  31056441 cgtggcacgatgttgcgtatttctgaacactatttaaggcttctttcttcatttttt 31056385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 34682032 - 34682088
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcatttttt 212  Q
    ||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||    
T  34682032 cgtggcacgatgctgcgtattcctgaacactatttaaggcttctttcttcatttttt 34682088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 36773367 - 36773448
Alignment:
Q  170 gcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||| | |||||||||||||  |||||||||||||||||||   |||||||||||||||| ||||| |  |||||||||    
T  36773367 gcgtattcctgaacactatttaagacttcattcttcattttttgtatagagcttcaagagagagaaactagggaaatcaaag 36773448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 42269767 - 42269711
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcatttttt 212  Q
    ||||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||||    
T  42269767 cgtggcacgatgctgcgtattcctgaacactatttaaggcttctttctttatttttt 42269711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 26352264 - 26352327
Alignment:
Q  104 cgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatg 167  Q
    |||| |||||||||||||||||||| || ||||||| || |||||||||||  |||||||||||    
T  26352264 cgtggcacgatgcaggagataagatcaagtattgtactgttaccaactccaatgtggcacgatg 26352327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 17450178 - 17450214
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaa 192  Q
    ||||||||||||||||||||||| |||||||||||||    
T  17450178 cgtggcacgatgctgcgtatttctgaacactatttaa 17450214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33162990 - 33162951
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  33162990 tgtgtctcaaaattgatgatgaagtttggaaaaatcgtgg 33162951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 34681849 - 34681928
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatg 115  Q
    ||||| ||||||| |||||| || ||| |  ||| || || ||||||||||||||||||||| ||||||||| |||||||    
T  34681849 cgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccagtaggaacgtggcacgatg 34681928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 2837722 - 2837807
Alignment:
Q  150 ctccatcgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttc-attttttgggaagagcttcaagagagaaa 234  Q
    ||||||||| | ||| ||||||| | | ||||||||||||||| |||||||||||| | |||||||||   |||| ||||||||||    
T  2837722 ctccatcgtagtacggtgctgcgaaatcccgaacactatttaaggcttcattcttcaagtttttgggattggctttaagagagaaa 2837807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 28671785 - 28671842
Alignment:
Q  183 cactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttg 240  Q
    ||||||| || |||||||||||||| ||||| | || ||||||||||||| |||||||    
T  28671785 cactattcaaagcttcattcttcatgttttgagtagggcttcaagagagagaaacttg 28671842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 8040463 - 8040411
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcatt 208  Q
    ||||||||||||||| ||||| | ||||||||||||| ||||  |||||||||    
T  8040463 cgtggcacgatgctgtgtattcctgaacactatttaaggcttatttcttcatt 8040411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 45687701 - 45687465
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatat 135  Q
    |||||||||||||||||||| |||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  45687701 cgtggtacgattgaatggttcagtttttgggttgccactggaaaagtcgtggcacgatccaggaggaacgtgacacgatgcaggagataagataaagtat 45687602  T
Q  136 tgtattgctaccaactccat---------------------cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgg 214  Q
    |||| | |||||||||||||                     |||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||     
T  45687601 tgtactactaccaactccatcgtgctacgatgggctcgaaacgtggcacaatgttgcgtatttctgaacactatttaaggcttcattcttcattttttga 45687502  T
Q  215 gaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
     ||| ||||||||||||| ||||| |  |||||||||    
T  45687501 aaagggcttcaagagagagaaactagggaaatcaaag 45687465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 46147719 - 46147624
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||||||||||||||||| | ||||||||||||| | ||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||    
T  46147719 cgtggcacgatgctgcgtattcctgaacactatttaaggtttcattcttcaatttttggtaagagcttcaagagagaaaaacttgggaaatcaaag 46147624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 36463901 - 36463825
Alignment:
Q  42 acgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcag 118  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  36463901 acgattgaatggttcagtttttgggttgccattgaaaaaatcgtggcacgatgcaggaggaacgtggcacgaagcag 36463825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 46147901 - 46147779
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg-----tacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatcc 95  Q
    |||||||||||||||| ||||||||||||||||||| |||     | ||||||||||||| || ||| |  ||| || || |||||||||||||||||||    
T  46147901 tgtgtctcaaaattgatgttgaagtttggaaaaatcatggcacgtttcgattgaatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatcc 46147802  T
Q  96 aggaggaacgtgacacgatgcag 118  Q
    |||||||||||| ||||||||||    
T  46147801 aggaggaacgtggcacgatgcag 46147779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 36463765 - 36463682
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttg 240  Q
    |||||||||||| |||||||| | ||||| ||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||    
T  36463765 cgtggcacgatgttgcgtattcctgaacattatttaaggcttcattcttcat-ttttgagtagagcttcaagagagaaaaacttg 36463682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 52467717 - 52467637
Alignment:
Q  157 gtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaact 238  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||||| ||||| |  ||||||||||||||| |||||    
T  52467717 gtggcacgatgctgcgtattcctgaacactatttaaggcttcattcttcat-ttttgagtggagcttcaagagagagaaact 52467637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 3793780 - 3793837
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttg 213  Q
    ||||||||||||||||||||||| ||||||||||||| | ||| |||||||| |||||    
T  3793780 cgtggcacgatgctgcgtatttctgaacactatttaaggtttctttcttcatcttttg 3793837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 52467839 - 52467782
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgat 93  Q
    ||||| |||||||||||||| || ||||| ||||||||||||||||||| ||||||||    
T  52467839 cgtggcacgattgaatggttcaggttttgggttgccattgaaaaaatcgaggcacgat 52467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 24334543 - 24334449
Alignment:
Q  83 cgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatgctgcgtatttc 178  Q
    ||||||||||||||||||||||||| ||||||| ||  |||||| |  | || |||| |  ||||  |||||||||||||||||||||||||||||    
T  24334543 cgtggcacgatccaggaggaacgtggcacgatgtagcggataaggtatagtaatgtacta-tacctgctccatcgtggcacgatgctgcgtatttc 24334449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45687757 - 45687718
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  45687757 tgtgtctcaaaattgatgttgaagtttggaaaaatcgtgg 45687718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 37755251 - 37755194
Alignment:
Q  194 gcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    |||||||||||||| ||||| || ||| ||||||||||| ||||||| ||||||||||    
T  37755251 gcttcattcttcatgttttgagatgagtttcaagagagagaaacttggaaaatcaaag 37755194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 44968164 - 44968099
Alignment:
Q  186 tatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||| | |||||  |||||||||  || |||||||||||||||| | ||||||||||||||||    
T  44968164 tatttaaggtttcatggttcatttttgaggtagagcttcaagagagagacacttgaaaaatcaaag 44968099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 21704166 - 21704098
Alignment:
Q  183 cactatttaatgcttcattcttcattttttgggaagag-cttcaagagagaaaaacttgaaaaatcaaa 250  Q
    ||||||||||  ||||||| ||||| ||||| | |||| |||||||||||| |||||||| ||||||||    
T  21704166 cactatttaagacttcatttttcatgttttgtgtagaggcttcaagagagagaaacttgagaaatcaaa 21704098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 12098236 - 12098141
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  12098236 cgtggcgcgatgctgcgtatttctgaacactatttaaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaag 12098141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 36146786 - 36146691
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    |||||||||||||||| |||| | ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  36146786 cgtggcacgatgctgcatattcctgaacattatttaaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaag 36146691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 41317952 - 41317716
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatat 135  Q
    ||||| |||||||||| ||| |||||||| ||||||| |  ||||||||||||||||| ||||||  ||||| |||||||||||||||||||  || ||     
T  41317952 cgtggcacgattgaattgttcagtttttgggttgccactcgaaaaatcgtggcacgatgcaggagatacgtggcacgatgcaggagataagagcaagtac 41317853  T
Q  136 tgtattgctaccaactccatcgt---------------------ggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgg 214  Q
    |||| ||||||||||||||||||                     |||||||||||||| ||  | ||||||||||||| |||||||||||||||||||||    
T  41317852 tgtactgctaccaactccatcgtggcaggatgggctcgaaacgtggcacgatgctgcggatacctgaacactatttaaggcttcattcttcattttttgg 41317753  T
Q  215 gaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
     ||||||||||||||||| ||||| |  |||||||||    
T  41317752 taagagcttcaagagagagaaactagggaaatcaaag 41317716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 8153134 - 8153228
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    |||||||||||| |||||||| | ||||||||||||| | ||||||||||| |||||| |||||||||||||||||| ||||| | ||||||||||    
T  8153134 cgtggcacgatgttgcgtattcctgaacactatttaaggtttcattcttca-tttttgagaagagcttcaagagagagaaactaggaaaatcaaag 8153228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 36146872 - 36146813
Alignment:
Q  91 gatccaggaggaacgtgacacgatgcaggagataagattaaatattgtattgctaccaac 150  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  36146872 gatccaggaggaacgtgacacgatgcaggagataagatcaagtattgtactgctaccaac 36146813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 24526260 - 24526166
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||| |||| |||||||| | ||||||||||||  ||||||||||||| |||||| | |||||||||||||||||||||| |  |||||||||    
T  24526260 cgtggcatgatgttgcgtattcctgaacactatttagagcttcattcttcaatttttgcg-agagcttcaagagagaaaaactagggaaatcaaag 24526166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 31105763 - 31105662
Alignment:
Q  150 ctccatcgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaa 249  Q
    ||||||||| | |||||| |||| | | | ||||||||| ||| | |||||||||| |||||  |||||||||||||||||| ||||||||| |||||||    
T  31105763 ctccatcgtagtacgatggtgcgaaatcctgaacactatgtaaggtttcattcttcttttttaaggaagagcttcaagagaggaaaacttgagaaatcaa 31105664  T
Q  250 ag 251  Q
    ||    
T  31105663 ag 31105662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24526480 - 24526441
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24526480 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 24526441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41318026 - 41317987
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41318026 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 41317987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 8153068 - 8153124
Alignment:
Q  109 cacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatg 167  Q
    |||||||||||||||  ||| || ||||||| |||||||||||||||||||||||||||    
T  8153068 cacgatgcaggagat--gatcaagtattgtactgctaccaactccatcgtggcacgatg 8153124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12098360 - 12098321
Alignment:
Q  1 tgtgtctcaaaattgaagttgaagtttggaaaaatcgtgg 40  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  12098360 tgtgtctcaaaattgatgttgaagtttggaaaaatcgtgg 12098321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 29160201 - 29160140
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagag 220  Q
    ||||||||||||||||||| |   ||||||||||||| ||||| |||||||||||||| ||||||    
T  29160201 cgtggcacgatgctgcgtact---gaacactatttaaggcttctttcttcattttttgagaagag 29160140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 22269439 - 22269483
Alignment:
Q  77 aaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggag 121  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||    
T  22269439 aaaaatcgtggcacgatccaggaggagcatgacacgattcaggag 22269483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 24526424 - 24526352
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagtt-gccattgaaaaaatcgtggcacgatccaggaggaacgtg 107  Q
    ||||| ||||||| |||||| || ||||| ||| | || || |||||||||||||||||||||||||||||||    
T  24526424 cgtggcacgattggatggttcaggttttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtg 24526352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 12098298 - 12098247
Alignment:
Q  42 acgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgat 93  Q
    |||||||||||||| ||||||||  |||||| || |||||||||||||||||    
T  12098298 acgattgaatggttcagtttttggattgccactggaaaaatcgtggcacgat 12098247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 3039372 - 3039288
Alignment:
Q  83 cgtggcacgatccaggaggaacgtgacacgatgcaggagataagattaaatattgtattgctaccaactccatcgtggcacgatg 167  Q
    |||||||||||  |||||||||||| |||||||||||||||||||  || |||||||||||||||||||||||||||||||||||    
T  3039372 cgtggcacgatggaggaggaacgtggcacgatgcaggagataagagcaagtattgtattgctaccaactccatcgtggcacgatg 3039288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 3039278 - 3039195
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttg 240  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  3039278 cgtggcacgatgctgcgtattcctgaacactatttaaggcttcattcttcaatttttgag-agagcttcaagagagaaaaacttg 3039195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 21801044 - 21801099
Alignment:
Q  157 gtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcatttttt 212  Q
    |||||||||||||  ||||| | ||||||||||||| ||||| |||||||||||||    
T  21801044 gtggcacgatgctatgtattcctgaacactatttaaggcttctttcttcatttttt 21801099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 3039399 - 3039355
Alignment:
Q  77 aaaaatcgtggcacgatccaggaggaacgtgacacgatgcaggag 121  Q
    |||||||||||||  |||||||||||||||| ||||||| |||||    
T  3039399 aaaaatcgtggcaaaatccaggaggaacgtggcacgatggaggag 3039355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 21800937 - 21801005
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggaggaac 104  Q
    ||||||||||||| |||||| || ||| |  ||| || || |||||||||||||||||||| |||||||    
T  21800937 cgtggtacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaagaggaac 21801005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 11128 - 11071
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgcttcattcttcattttttg 213  Q
    ||||||||||||||||||||||| |||||||||||||  |||| |||||||| |||||    
T  11128 cgtggcacgatgctgcgtatttctgaacactatttaagacttctttcttcatcttttg 11071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 10282249 - 10282208
Alignment:
Q  77 aaaaatcgtggcacgatccaggaggaacgtgacacgatgcag 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  10282249 aaaaatcgtggcacgatccaggaggaacgtggcacgatgcag 10282208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 10282148 - 10282107
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgctt 197  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  10282148 cgtggcacgatgctgcgtatttctgaacactatttaaggctt 10282107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 3881271 - 3881241
Alignment:
Q  77 aaaaatcgtggcacgatccaggaggaacgtg 107  Q
    |||||||||||||||||||||||||||||||    
T  3881271 aaaaatcgtggcacgatccaggaggaacgtg 3881241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 28277759 - 28277824
Alignment:
Q  36 cgtggtacgattgaatggtttagtttttgagttgccattgaaaaaatcgtggcacgatccaggagga 102  Q
    ||||| ||||||| ||||||||| ||| | |||| ||||| |||||| |||||||||||||||||||    
T  28277759 cgtggcacgattggatggtttaggtttgg-gttgtcattggaaaaattgtggcacgatccaggagga 28277824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 5007385 - 5007450
Alignment:
Q  186 tatttaatgcttcattcttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    ||||||| |||||||| |||||||||  || || |||| |||||||||||||||  ||||||||||    
T  5007385 tatttaaggcttcattgttcatttttaaggtagggctttaagagagaaaaacttagaaaatcaaag 5007450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 16451932 - 16451980
Alignment:
Q  203 ttcattttttgggaagagcttcaagagagaaaaacttgaaaaatcaaag 251  Q
    |||||||||  |||||||||||||||||| ||||||||  |||||||||    
T  16451932 ttcatttttgaggaagagcttcaagagaggaaaacttgggaaatcaaag 16451980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 5657 - 5698
Alignment:
Q  156 cgtggcacgatgctgcgtatttccgaacactatttaatgctt 197  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  5657 cgtggcacgatgctgcgtatttctgaacactatttaaggctt 5698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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