View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11099_high_19 (Length: 230)

Name: NF11099_high_19
Description: NF11099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11099_high_19
NF11099_high_19
[»] chr7 (14 HSPs)
chr7 (1-230)||(49002283-49002510)
chr7 (10-230)||(22955074-22955294)
chr7 (3-228)||(37854059-37854283)
chr7 (1-230)||(4618517-4618746)
chr7 (1-230)||(8133321-8133550)
chr7 (9-228)||(5781583-5781799)
chr7 (72-222)||(40382016-40382167)
chr7 (13-224)||(23402140-23402350)
chr7 (89-222)||(4902465-4902598)
chr7 (1-225)||(7742976-7743211)
chr7 (127-226)||(10675025-10675124)
chr7 (3-130)||(19786343-19786470)
chr7 (166-225)||(25470643-25470702)
chr7 (50-130)||(8758396-8758476)
[»] chr5 (26 HSPs)
chr5 (15-230)||(22616564-22616779)
chr5 (1-230)||(41417341-41417570)
chr5 (1-230)||(36055637-36055865)
chr5 (10-226)||(33163579-33163797)
chr5 (1-228)||(31878440-31878668)
chr5 (39-229)||(27579123-27579311)
chr5 (1-228)||(10237471-10237697)
chr5 (1-230)||(21320808-21321036)
chr5 (127-225)||(29766569-29766667)
chr5 (1-130)||(25653641-25653770)
chr5 (168-230)||(12080496-12080558)
chr5 (39-124)||(10053318-10053403)
chr5 (161-225)||(25654566-25654630)
chr5 (166-230)||(13381123-13381187)
chr5 (39-130)||(12081129-12081220)
chr5 (166-228)||(33752472-33752534)
chr5 (5-130)||(13380560-13380685)
chr5 (166-219)||(33848120-33848173)
chr5 (51-130)||(21266126-21266205)
chr5 (51-130)||(13887348-13887427)
chr5 (166-225)||(8762963-8763022)
chr5 (166-226)||(10053820-10053882)
chr5 (166-225)||(13888329-13888388)
chr5 (10-130)||(8777275-8777395)
chr5 (90-130)||(25521705-25521745)
chr5 (10-130)||(33752910-33753030)
[»] chr3 (26 HSPs)
chr3 (67-230)||(32180513-32180676)
chr3 (1-213)||(49359407-49359619)
chr3 (3-226)||(19606680-19606903)
chr3 (1-224)||(44880848-44881070)
chr3 (1-230)||(40640393-40640625)
chr3 (1-230)||(7568488-7568710)
chr3 (1-229)||(45879250-45879489)
chr3 (39-223)||(26000627-26000811)
chr3 (1-217)||(38392403-38392619)
chr3 (1-226)||(47930433-47930657)
chr3 (43-226)||(7758190-7758372)
chr3 (71-229)||(51878241-51878398)
chr3 (3-130)||(42204405-42204530)
chr3 (169-229)||(40744202-40744262)
chr3 (166-225)||(36689674-36689733)
chr3 (10-103)||(53811865-53811958)
chr3 (128-196)||(31706763-31706831)
chr3 (67-123)||(47870314-47870370)
chr3 (1-101)||(4556598-4556702)
chr3 (166-225)||(11019700-11019759)
chr3 (166-225)||(48154454-48154513)
chr3 (166-228)||(12121217-12121279)
chr3 (17-130)||(43485384-43485497)
chr3 (1-130)||(54606763-54606892)
chr3 (172-228)||(11872740-11872796)
chr3 (1-61)||(18272155-18272215)
[»] chr1 (18 HSPs)
chr1 (1-230)||(13876681-13876910)
chr1 (1-230)||(27118387-27118616)
chr1 (1-222)||(15964157-15964378)
chr1 (1-227)||(16127577-16127800)
chr1 (1-230)||(10758062-10758291)
chr1 (39-228)||(25943293-25943482)
chr1 (13-222)||(31804854-31805063)
chr1 (127-228)||(3120626-3120727)
chr1 (127-223)||(47554938-47555034)
chr1 (149-229)||(16135528-16135608)
chr1 (3-144)||(16132534-16132675)
chr1 (138-228)||(3120238-3120328)
chr1 (1-130)||(421450-421579)
chr1 (1-94)||(28012123-28012216)
chr1 (126-178)||(43579463-43579515)
chr1 (166-225)||(422205-422264)
chr1 (87-130)||(21263907-21263950)
chr1 (69-129)||(17695870-17695930)
[»] chr2 (25 HSPs)
chr2 (1-230)||(41643929-41644159)
chr2 (9-227)||(15650913-15651131)
chr2 (3-223)||(18059131-18059351)
chr2 (1-228)||(6177832-6178058)
chr2 (1-230)||(27138783-27139011)
chr2 (91-230)||(18947372-18947511)
chr2 (72-230)||(39788372-39788530)
chr2 (1-220)||(18779179-18779392)
chr2 (3-187)||(34441729-34441910)
chr2 (74-230)||(38249900-38250052)
chr2 (127-226)||(17244836-17244935)
chr2 (130-224)||(19093640-19093734)
chr2 (39-228)||(41713257-41713445)
chr2 (2-225)||(42005447-42005667)
chr2 (1-230)||(19073415-19073638)
chr2 (127-230)||(18514494-18514597)
chr2 (143-228)||(34441644-34441728)
chr2 (15-130)||(30844918-30845033)
chr2 (169-230)||(27355193-27355254)
chr2 (166-211)||(40912471-40912516)
chr2 (15-123)||(58097-58204)
chr2 (166-209)||(32652621-32652664)
chr2 (169-228)||(45411917-45411976)
chr2 (166-196)||(7565511-7565541)
chr2 (70-130)||(7553480-7553540)
[»] chr4 (16 HSPs)
chr4 (1-230)||(2266619-2266847)
chr4 (71-230)||(2570605-2570764)
chr4 (10-229)||(9743654-9743875)
chr4 (67-228)||(17612457-17612618)
chr4 (69-228)||(2707998-2708156)
chr4 (1-226)||(1012353-1012569)
chr4 (10-178)||(54995613-54995781)
chr4 (127-230)||(49878858-49878961)
chr4 (8-130)||(22729775-22729896)
chr4 (1-130)||(22756794-22756922)
chr4 (11-85)||(51204650-51204724)
chr4 (170-228)||(54995010-54995068)
chr4 (166-222)||(28292430-28292486)
chr4 (1-101)||(28293124-28293224)
chr4 (39-130)||(33036064-33036155)
chr4 (17-85)||(51959922-51959990)
[»] chr8 (12 HSPs)
chr8 (67-230)||(3038529-3038691)
chr8 (1-228)||(4108679-4108903)
chr8 (67-215)||(6267282-6267430)
chr8 (39-222)||(7290814-7290997)
chr8 (39-229)||(18756430-18756620)
chr8 (88-225)||(23176554-23176690)
chr8 (127-230)||(30651005-30651108)
chr8 (126-228)||(28220797-28220898)
chr8 (138-223)||(34685969-34686054)
chr8 (1-103)||(34463473-34463575)
chr8 (39-129)||(35735844-35735933)
chr8 (39-104)||(30381002-30381067)
[»] chr6 (13 HSPs)
chr6 (1-223)||(11083924-11084143)
chr6 (44-196)||(30341124-30341276)
chr6 (34-230)||(34993921-34994117)
chr6 (111-230)||(4104183-4104302)
chr6 (1-230)||(19631806-19632033)
chr6 (67-228)||(26301685-26301850)
chr6 (126-230)||(6613755-6613859)
chr6 (166-225)||(4487823-4487882)
chr6 (166-225)||(25441709-25441768)
chr6 (87-130)||(4488444-4488487)
chr6 (172-225)||(3148918-3148971)
chr6 (1-54)||(4102864-4102917)
chr6 (67-103)||(4103034-4103070)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-228)||(24582-24808)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-226)||(5647-5871)
[»] scaffold0001 (1 HSPs)
scaffold0001 (166-226)||(65992-66052)
[»] scaffold0312 (2 HSPs)
scaffold0312 (1-130)||(8993-9122)
scaffold0312 (166-225)||(8308-8367)
[»] scaffold0262 (2 HSPs)
scaffold0262 (67-124)||(12034-12091)
scaffold0262 (170-222)||(11443-11495)
[»] scaffold0003 (1 HSPs)
scaffold0003 (172-228)||(107955-108011)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 49002283 - 49002510
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||  ||||||||| ||||||||||||||    
T  49002283 tcattgagtatttgtgtatttaatccataccatatcagattatatggtgtattgcacattttcccttaaggtgt--cattatatctttacttattgcaat 49002380  T
Q  101 tgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgag 199  Q
    ||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49002381 tgtgtgtct-gattaaatcaaaattaaacatagattcccatttgtgcactaagattaaaattccccttaatattttgtatgaggactgatttgtaatgag 49002479  T
Q  200 gtaaagtttagttttagagtggtccaccagc 230  Q
    |||||||||||||||||||||||||||||||    
T  49002480 gtaaagtttagttttagagtggtccaccagc 49002510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 22955294 - 22955074
Alignment:
Q  10 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttcta 109  Q
    |||||||||||||||||||  ||  ||| |||||||||| |||||||||||| ||| |||||| ||||||| |||| ||||||||||||||||||| |      
T  22955294 atttgtgtatttaatccatgtcacgtcaaattatatggtgtattgcacatttgctcataaggtatgtcattgtatctttacttattgcaattgtgtccct 22955195  T
Q  110 gattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagttta 209  Q
     |||||||||| ||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  22955194 tattaaatcaacattaaacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtatgagaactgatttgtaataaggtaaagttta 22955095  T
Q  210 gttttagagtggtccaccagc 230  Q
    |||||||||||||||||||||    
T  22955094 gttttagagtggtccaccagc 22955074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 37854283 - 37854059
Alignment:
Q  3 attgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattg 102  Q
    |||||| |||||||||||||||||||  ||  ||| |||||||||| |||||||||||| ||| |||||| |||  ||||||| ||||| ||||||||||    
T  37854283 attgagcatttgtgtatttaatccatgtcacgtcacattatatggtgtattgcacatttgctcataaggtatgt--ttatatctttactgattgcaattg 37854186  T
Q  103 tgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactg-atttgtaatgaggt 201  Q
    ||| |  ||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||    
T  37854185 tgtccctgattaaatcaaaattaaacatagattttcatttgtacactaagattgaaattccccttaatattttgtatgaggactgaatttggaataaagt 37854086  T
Q  202 aaagtttagttttagagtggtccacca 228  Q
    |||||||| ||||||||||||||||||    
T  37854085 aaagtttaattttagagtggtccacca 37854059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4618746 - 4618517
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  ||||||||||||||| |||  |   ||| |||||||||| ||||||||||||  || |||  |||||||||||||  ||| ||||||||||    
T  4618746 tcattgaacatttgtgtatttaattcatgtcgcttcaaattatatggtgtattgcacatttgttcataaaatgtgtcattatatatttatttattgcaat 4618647  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||| | |   |||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||     
T  4618646 tgtatacctcattaaatcaaaattaaacatagattctcatttgtgcaccaagattgaaattccccttaatattttgtatgatgactgatttgtagtaaga 4618547  T
Q  201 taaagtttagttttagagtggtccaccagc 230  Q
    ||||||||||||||||||||||||||||||    
T  4618546 taaagtttagttttagagtggtccaccagc 4618517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 8133550 - 8133321
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    ||||| || ||||||||||||||| ||   ||  ||| |||||||||| |||||||| ||| ||  |||||| |||||||||||| ||||||||||||||    
T  8133550 tcattaagcatttgtgtatttaattcaagacacgtcagattatatggtgtattgcacgtttgcttataaggtctgtcattatatcattacttattgcaat 8133451  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    || || |   |||||||||||||| ||| ||||||   ||||||||| |||||||||||||||||||||||||||  |||| |||||||||||||| |||    
T  8133450 tgcgtccctaattaaatcaaaattaaacgtagattcttatttgtgcagtaagattgaaattccccttaatattttacatgaagactgatttgtaataagg 8133351  T
Q  201 taaagtttagttttagagtggtccaccagc 230  Q
    |||||||||||||||||||||| |||||||    
T  8133350 taaagtttagttttagagtggttcaccagc 8133321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 5781583 - 5781799
Alignment:
Q  9 tatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttct 108  Q
    ||||||||||||||||||||  ||  ||||  |||||||| ||||||| ||||   | |||  |||||||||||||| ||| ||||||||||||||| ||    
T  5781583 tatttgtgtatttaatccatgtcacgtcat--tatatggtgtattgcatatttgaccataaaatgtgtcattatatctttatttattgcaattgtgtcct 5781680  T
Q  109 agattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagttt 208  Q
     ||||||||||||||| ||||||||||  |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| | |||||  ||    
T  5781681 tgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaatt-ccctttatattttgtatgatgactgatttgtaataaagtaaaactt 5781779  T
Q  209 agttttagagtggtccacca 228  Q
    ||||||| |||||| |||||    
T  5781780 agttttaaagtggtgcacca 5781799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 40382016 - 40382167
Alignment:
Q  72 tgtgtcattatatccttacttattgcaatt-gtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaat 170  Q
    |||||||||||||| ||||||||| ||||| |||| |   ||||||| |||||| ||||||||||  |||||||||||||||||||||||| ||||||||    
T  40382016 tgtgtcattatatctttacttattacaatttgtgtccctaattaaataaaaattaaacatagattatcatttgtgcactaagattgaaatttcccttaat 40382115  T
Q  171 attttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggt 222  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  40382116 attttgtatgcggactgatttgtaataaggtaaagtttagttttagagtggt 40382167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 23402350 - 23402140
Alignment:
Q  13 tgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagat 112  Q
    |||||||||||| |||  ||  |||||||||||||| |||||| |||||   | |||| | |||||||||||  ||||||||| ||||||||| |  |||    
T  23402350 tgtgtatttaattcatgtcacgtcatattatatggtgtattgcgcatttgtccataagatatgtcattatatatttacttatttcaattgtgtccctgat 23402251  T
Q  113 taaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagtt 212  Q
    |||||||||||  ||||| ||||  |||||||||||||||| ||||||| |||||||||||||||| || ||||||||||||||  | ||||||||||||    
T  23402250 taaatcaaaata-aacattgattctcatttgtgcactaagactgaaatttcccttaatattttgtacgatgactgatttgtaataggataaagtttagtt 23402152  T
Q  213 ttagagtggtcc 224  Q
    ||||||||||||    
T  23402151 ttagagtggtcc 23402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 4902465 - 4902598
Alignment:
Q  89 acttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactga 188  Q
    |||||||||||| |||| |  ||||||||||||||| |||||||||| | | || ||||||||||| ||||||||||||||||||||||||||| ||| |    
T  4902465 acttattgcaatagtgtccctgattaaatcaaaattaaacatagattccaaattatgcactaagatagaaattccccttaatattttgtatgagtactaa 4902564  T
Q  189 tttgtaatgaggtaaagtttagttttagagtggt 222  Q
    |||||||| |||||||||||||||||||||||||    
T  4902565 tttgtaataaggtaaagtttagttttagagtggt 4902598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7742976 - 7743211
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    ||||||||||||||||||||||||| ||  ||  | | |||||||||| ||||| ||||||   | ||||| ||||||||||||| ||||||||||||||    
T  7742976 tcattgagtatttgtgtatttaatctatgtcacgttagattatatggtgtattgtacatttgtccataaggcgtgtcattatatctttacttattgcaat 7743075  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatt-----------tccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgat 189  Q
    ||||  |  |||||||| |||||| ||||||||||           ||||||| | ||||||||||||||| | | |||||||||| ||||||| ||| |    
T  7743076 tgtgcccctgattaaattaaaattaaacatagattctcatttgttttccatttatacactaagattgaaatgctctttaatattttatatgagggctgct 7743175  T
Q  190 ttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||||| ||||||||||||||||||||||||||||    
T  7743176 ttgtaataaggtaaagtttagttttagagtggtcca 7743211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 10675124 - 10675025
Alignment:
Q  127 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 226  Q
    |||| |||| ||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||| |||||    
T  10675124 acatggattcccatttgtgtattaagatttaaattccccttaatattttgtatgaggactaatttgtaataaagtaaagtttagtcttagagtgatccac 10675025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 19786343 - 19786470
Alignment:
Q  3 attgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctct-taaggtgtgtcattatatccttacttattgcaatt 101  Q
    |||||| ||||||||||||||| ||| |||  |||||||||||| |  |||||||||||  ||| ||||||||||||||||||| |||||||||||||||    
T  19786343 attgagcatttgtgtatttaattcatgccacgtcatattatatgatgcattgcacatttg-tctgtaaggtgtgtcattatatctttacttattgcaatt 19786441  T
Q  102 gtgttctagattaaatcaaaattcaacat 130  Q
    | || || ||||||||||||||| |||||    
T  19786442 gagtccttgattaaatcaaaattaaacat 19786470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 25470643 - 25470702
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||||||||||| ||||||||||||||||| | ||||| |||||| |||  ||||||||    
T  25470643 ttaatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtcca 25470702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 8758396 - 8758476
Alignment:
Q  50 tattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacat 130  Q
    ||||||||||||  || || ||||||  | |||||  |||||||||||||||||| ||| |||||||| |||||| |||||    
T  8758396 tattgcacatttattcatacggtgtgctactatatttttacttattgcaattgtgctcttgattaaattaaaattaaacat 8758476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 22616564 - 22616779
Alignment:
Q  15 tgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagatta 114  Q
    ||||||||||||||  ||  |||||||||||||| ||||| |||||| | | ||||||||||||||||||| ||||||||||||||||||| |  |||||    
T  22616564 tgtatttaatccatgtcacgtcatattatatggtgtattggacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgtccctgatta 22616663  T
Q  115 aatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagtttt 214  Q
    |||||||||| ||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22616664 aatcaaaattaaacatagattctcatttgtgcactaaaattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagtttagtttt 22616763  T
Q  215 agagtggtccaccagc 230  Q
    ||||||||||||||||    
T  22616764 agagtggtccaccagc 22616779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41417570 - 41417341
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||||||||||||||  ||| ||| ||| |||||||||| ||||||| |||| ||| |||||||||||||| |||| ||||||||||||||    
T  41417570 tcattgaacatttgtgtatttaatttatatcatgtcagattatatggtgtattgcaaatttgctcataaggtgtgtcattttatctttacttattgcaat 41417471  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| | |||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||    
T  41417470 tgtgtcccagattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttattattttgtatgatgactgatttgtaataagg 41417371  T
Q  201 taaagtttagttttagagtggtccaccagc 230  Q
    |||| |||||||||| | || |||||||||    
T  41417370 taaaatttagttttaaaatgatccaccagc 41417341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36055865 - 36055637
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||| ||||||| ||||||| |||  |  |||| |||| ||||| |||||||||||| ||| ||||||||||||||||||| ||||||||| ||||    
T  36055865 tcattgagcatttgtgaatttaattcatgtcgcatcagattacatggtgtattgcacatttgctcataaggtgtgtcattatatctttacttattacaat 36055766  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |  ||||||||||||||| ||||||||||  |||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||||| |||    
T  36055765 tgtgtccccgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaatt-cccttaatatcttgtatgagaattgatttgtaataagg 36055667  T
Q  201 taaagtttagttttagagtggtccaccagc 230  Q
    ||||||||||||||||||||| ||||||||    
T  36055666 taaagtttagttttagagtgggccaccagc 36055637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 33163579 - 33163797
Alignment:
Q  10 atttgtgtatttaatccataccatatcatattatat--ggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttc 107  Q
    |||||||| ||||||| || ||| |||| |||||||  ||| ||||||||||||   | ||||||||| ||||||||| ||||||||||||||||||| |    
T  33163579 atttgtgtgtttaatctatgccacatcagattatatatggtgtattgcacatttatccataaggtgtgccattatatctttacttattgcaattgtgtcc 33163678  T
Q  108 tagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtt 207  Q
      ||||||||||||||| |||||| |||  ||| |||||| |||||||||||||  |||||||||||||||||| |||||||||||||| ||||||||||    
T  33163679 ctgattaaatcaaaattaaacataaattctcatgtgtgcattaagattgaaattttccttaatattttgtatgaagactgatttgtaataaggtaaagtt 33163778  T
Q  208 tagttttagagtggtccac 226  Q
    |||||||| ||||||||||    
T  33163779 tagttttaaagtggtccac 33163797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31878440 - 31878668
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctct-taaggtgtgtcattatatccttacttattgcaa 99  Q
    ||||| || ||||||||||||||| |||  ||  ||| |||||||||| ||||||||||||  ||| ||||||||||||||||||| ||||||||  |||    
T  31878440 tcattaagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacatttg-tctataaggtgtgtcattatatctttacttatgacaa 31878538  T
Q  100 ttgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaata-ttttgtatgaggactgatttgtaatga 198  Q
    |||||| |  ||||||||||||||| |||||||||| | ||||||||||||||||||||||||  ||||||| ||||||||| | |||||| |||||| |    
T  31878539 ttgtgtccctgattaaatcaaaattaaacatagattcctatttgtgcactaagattgaaattcttcttaatatttttgtatgggaactgatctgtaataa 31878638  T
Q  199 ggtaaagtttagttttagagtggtccacca 228  Q
    ||||||||||| ||||||||||||||||||    
T  31878639 ggtaaagtttaattttagagtggtccacca 31878668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 27579123 - 27579311
Alignment:
Q  39 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgt-tctagattaaatcaaaattcaacatagatttc 137  Q
    |||||||||| ||||||| |||| |   ||| ||| ||||||||||| ||| ||||||||||||||| |||| |||||||||||| | ||||||  ||||    
T  27579123 attatatggtgtattgcatatttgcctataaagtgcgtcattatatctttatttattgcaattgtgtctcta-attaaatcaaaagtaaacata--tttc 27579219  T
Q  138 catttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccag 229  Q
    ||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  27579220 catttgtgcactaagattgaaattctccttaatattttgtttaaggaatgatttgtaataaggtaaagtttagttttagagtggtccaccag 27579311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 10237471 - 10237697
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||| ||||||||||||||| |||  ||  ||| |||||||||| |||||| |||||   | |||||| | |||||||||  ||||||||| ||||    
T  10237471 tcattgagcatttgtgtatttaattcatttcacgtcagattatatggtgtattgcgcatttgtccataaggtatttcattatatatttacttattccaat 10237570  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| | |||||||||||||||  ||||||||||  ||||||| |||||||||||||||| |||||||||||||||| || |||| ||||||||| |||    
T  10237571 tgtgtcccagattaaatcaaaata-aacatagattctcatttgtacactaagattgaaatttcccttaatattttgtacgatgactaatttgtaataagg 10237669  T
Q  201 taaagtttagttttagagtggtccacca 228  Q
    |||||||||||| |||||||||| ||||    
T  10237670 taaagtttagttctagagtggtctacca 10237697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 21320808 - 21321036
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||| ||| ||||||||||   || ||| |||| |||||||||| ||||||| |||| |   |||| ||| |||||||||| ||||||||| ||||    
T  21320808 tcattgagcattcgtgtatttaactaatgccacatcagattatatggtgtattgcatatttgcatataagatgtatcattatatctttacttattacaat 21320907  T
Q  101 tgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgag 199  Q
    ||||| ||| ||||||||||||||| ||||||||||  |||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||||   ||    
T  21320908 tgtgtctct-gattaaatcaaaattaaacatagattctcatttgagcactaaaattgaaatttcgcttaatattttgtatgaggattgatttgtaggaag 21321006  T
Q  200 gtaaagtttagttttagagtggtccaccagc 230  Q
    |||||||||||||||||| || |||||||||    
T  21321007 gtaaagtttagttttaga-tgatccaccagc 21321036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 29766667 - 29766569
Alignment:
Q  127 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    |||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||    
T  29766667 acatggattcccatttgtgcattaagatttaaattccccttaatattttgtatgagaactaatttgtaataaggtaaagtttagtcttagagtggtcca 29766569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 25653641 - 25653770
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||||||||||||||||||| |||| ||  ||| ||| |||||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||     
T  25653641 tcattgagtatttgtgtatttaattcatatcacgtcagattgtatggtgtattgcacatttgctcataaggtgtgtcattatatctttacttattgcaac 25653740  T
Q  101 tgtgttctagattaaatcaaaattcaacat 130  Q
    | | | |  ||||||||||||||| |||||    
T  25653741 tatttccctgattaaatcaaaattaaacat 25653770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 12080558 - 12080496
Alignment:
Q  168 aatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagc 230  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  12080558 aatattttgtatgaggactgatttgtaataaggtaaagtttagtcttaaagtggtccaccagc 12080496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 10053318 - 10053403
Alignment:
Q  39 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaatt 124  Q
    ||||||| || |||||||||||| ||| ||||||||||||||||||| |||||||||||||||| || |  |||||||||||||||    
T  10053318 attatatcgtgtattgcacatttgctcataaggtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaatt 10053403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 25654566 - 25654630
Alignment:
Q  161 tccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||||||||| ||||||  | |||||||||||||| ||||||||||||||||||||||||||||    
T  25654566 tccccttaatagtttgtacaaagactgatttgtaataaggtaaagtttagttttagagtggtcca 25654630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 13381123 - 13381187
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagc 230  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||  |||||| |||||||||||    
T  13381123 ttaatattttgtatgaggattgatttataataaggtaaagtttagccttagagaggtccaccagc 13381187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 12081220 - 12081129
Alignment:
Q  39 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacat 130  Q
    |||||||||| |||| ||||||| ||  ||||||||||| ||||||| |||||||||||||||  || |  ||||||||||||||| |||||    
T  12081220 attatatggtgtattacacatttgcttataaggtgtgtccttatatctttacttattgcaattaagtccctgattaaatcaaaattaaacat 12081129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 33752534 - 33752472
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||| ||||||| ||| ||||    
T  33752534 ttaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagtagtctacca 33752472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 13380560 - 13380685
Alignment:
Q  5 tgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtg 104  Q
    |||||||||||||||||||||  ||  |  ||||| || ||||| |||||||||||| | | |||  | |||||||||||| ||| |||||||||||||     
T  13380560 tgagtatttgtgtatttaatctttataacgtcatactacatggtgtattgcacatttacccataaaatatgtcattatatctttatttattgcaattgta 13380659  T
Q  105 ttctagattaaatcaaaattcaacat 130  Q
    | |  ||||||||||||||| |||||    
T  13380660 tccctgattaaatcaaaattaaacat 13380685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 33848173 - 33848120
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagt 219  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||| |||||||    
T  33848173 ttaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagt 33848120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 21266126 - 21266205
Alignment:
Q  51 attgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgt-tctagattaaatcaaaattcaacat 130  Q
    ||||||||||| ||| |||||||| |||||||||| |||||||||||||||| || ||| |||||||||||| || |||||    
T  21266126 attgcacatttgctcataaggtgtatcattatatctttacttattgcaattgagtctct-gattaaatcaaatttaaacat 21266205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 13887348 - 13887427
Alignment:
Q  51 attgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacat 130  Q
    |||| |||||| ||| || |||||  ||||||||  ||||||||||||||||||| || ||||||||||||||| |||||    
T  13887348 attgtacatttgctcatatggtgtaccattatatttttacttattgcaattgtgtccttgattaaatcaaaattaaacat 13887427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 8763022 - 8762963
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||||||||||| ||||||||||||||||| | ||||| |||||| |||  ||||||||    
T  8763022 ttaatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtcca 8762963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 10053820 - 10053882
Alignment:
Q  166 ttaatattttgtatgaggactga--tttgtaatgaggtaaagtttagttttagagtggtccac 226  Q
    |||||||||||||||||||||||  |||||||| | ||||| ||||||  |||||||||||||    
T  10053820 ttaatattttgtatgaggactgatttttgtaataaagtaaaatttagtcgtagagtggtccac 10053882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 13888329 - 13888388
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    |||||||||||||||||||||||||| |||| | ||||| |||||| ||| || ||||||    
T  13888329 ttaatattttgtatgaggactgatttataataaagtaaaatttagtgttacaggggtcca 13888388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 8777395 - 8777275
Alignment:
Q  10 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttcta 109  Q
    ||||||||||||||| ||| ||| |||| ||| ||  ||  |||| |||||| ||| || |||||  || |||||  ||||||||||||||||||| ||     
T  8777395 atttgtgtatttaatgcatgccacatcaaattttagtgtgcattgtacatttgctcatatggtgtaccactatatttttacttattgcaattgtgtcctt 8777296  T
Q  110 gattaaatcaaaattcaacat 130  Q
      ||||||||||||| |||||    
T  8777295 cgttaaatcaaaattaaacat 8777275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 25521745 - 25521705
Alignment:
Q  90 cttattgcaattgtgttctagattaaatcaaaattcaacat 130  Q
    |||||||||||||||| || ||||||||||||||| |||||    
T  25521745 cttattgcaattgtgtccttgattaaatcaaaattaaacat 25521705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 33753030 - 33752910
Alignment:
Q  10 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttcta 109  Q
    |||||||||||||||| ||  ||  ||| |||||| ||| ||||||||||||   |  ||||||||| ||| |||| ||||||||||| ||||||| |      
T  33753030 atttgtgtatttaatcaatgtcacttcagattatagggtttattgcacatttgtccacaaggtgtgttattgtatctttacttattgccattgtgtccct 33752931  T
Q  110 gattaaatcaaaattcaacat 130  Q
    |||||||| ||| || |||||    
T  33752930 gattaaataaaatttaaacat 33752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 32180676 - 32180513
Alignment:
Q  67 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccct 166  Q
    ||||||||||||||||||| ||||||||||||||||||| |  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32180676 taaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagatttccatttgtgcactaagattgaaattcccct 32180577  T
Q  167 taatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagc 230  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32180576 taatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtccaccagc 32180513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 49359619 - 49359407
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||||||||||||||||||  ||  |||||||||||| | |||||||||||| ||| ||||||||||||||||||| ||||||| ||||||    
T  49359619 tcattgaacatttgtgtatttaatccatgacacgtcatattatatgatgtattgcacatttgctcataaggtgtgtcattatatctttacttaatgcaat 49359520  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |  ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||    
T  49359519 tgtgtccctgattaaatcaaaattaaacatagatttctatttgtgcactaagattgaaattccctttaatattttgtatgaggactgatttataataagg 49359420  T
Q  201 taaagtttagttt 213  Q
    |||||||||||||    
T  49359419 taaagtttagttt 49359407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 19606903 - 19606680
Alignment:
Q  3 attgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattg 102  Q
    |||||| ||||||||||||||| ||   ||  ||| |||||||||| ||||| |||||||  | ||||||||||||||||||| |||||| ||||||| |    
T  19606903 attgagcatttgtgtatttaattcaggtcacgtcagattatatggtgtattgaacatttttccataaggtgtgtcattatatctttacttgttgcaatcg 19606804  T
Q  103 tgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggta 202  Q
    ||| |   |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19606803 tgtcccttattaaatcaaaattaaacatagatttccatttgtgcaccaagattgaaattccccttaatattttgtatgaggactgatttgtaataaggta 19606704  T
Q  203 aagtttagttttagagtggtccac 226  Q
    ||||||||||||||||||||||||    
T  19606703 aagtttagttttagagtggtccac 19606680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44880848 - 44881070
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||| ||||||||||||||  ||  ||| || ||||||| |||||||||||| ||| ||||| ||||||||||||| ||||||||| ||||    
T  44880848 tcattgaacatttatgtatttaatccatgtcacgtcagataatatggtgtattgcacatttgctcataagg-gtgtcattatatctttacttattacaat 44880946  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |  ||||||||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| |||    
T  44880947 tgtgtccctgattaaatcaaaattaaacatagattcacatttgtgcactaggattgaaattccccttaatattttatatgaggattgatttgtaataagg 44881046  T
Q  201 taaagtttagttttagagtggtcc 224  Q
    ||||||||||||||||| ||||||    
T  44881047 taaagtttagttttagattggtcc 44881070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 40640625 - 40640393
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgc--- 97  Q
    |||||||| |||||||||||||||||||  ||  |||||||||||||| |||||||||||| | | |||| |||||||||||||  |||||||||||       
T  40640625 tcattgagcatttgtgtatttaatccatgtcacgtcatattatatggtgtattgcacatttgcccataagatgtgtcattatatttttacttattgctgc 40640526  T
Q  98 aattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatg 197  Q
    |||||||| || ||||||||||||||| || ||| |||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||     
T  40640525 aattgtgtccttgattaaatcaaaattaaagatatattctcatttgtgcactaaaattgaaattctccttaatattttgtatgaggactgatttgtaata 40640426  T
Q  198 aggtaaagtttagttttagagtggtccaccagc 230  Q
    |  |||||||||||||||||||| || ||||||    
T  40640425 aaataaagtttagttttagagtgatctaccagc 40640393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 7568710 - 7568488
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||| ||||||||||||||| |||  ||  ||| ||||||||   |||||||||||| | | ||| ||||||||||||||| ||||||||| ||||    
T  7568710 tcattgagcatttgtgtatttaattcatgtcacgtcagattatatgcagtattgcacatttgcacataaagtgtgtcattatatctttacttattacaat 7568611  T
Q  101 tgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgag 199  Q
    ||||| ||| ||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  7568610 tgtgtctct-gattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgta----- 7568517  T
Q  200 gtaaagtttagttttagagtggtccaccagc 230  Q
      |||||||||||||||||||||||||||||    
T  7568516 --aaagtttagttttagagtggtccaccagc 7568488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 45879489 - 45879250
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcac-----------attttctcttaaggtgtgtcattatatcctta 89  Q
    |||||||| ||||||||||||||||||| |||  ||| |||||||||| ||||||||           |||| | | ||||||||||| ||||||| |||    
T  45879489 tcattgagcatttgtgtatttaatccatgccacgtcagattatatggtgtattgcacatttgttgcacatttgcccataaggtgtgtcgttatatcttta 45879390  T
Q  90 cttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgat 189  Q
    ||||||| |||||| |||  ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  45879389 cttattgaaattgttttcctgattaaatcaaaattaaacatagattctcatttgtgcactaacattgaaattcccctttatattttgtatgaggactgat 45879290  T
Q  190 ttgtaatgaggtaaagtttagttttagagtggtccaccag 229  Q
    ||||||| ||||||||||||| |||| |||||||||||||    
T  45879289 ttgtaataaggtaaagtttagctttaaagtggtccaccag 45879250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 26000627 - 26000811
Alignment:
Q  39 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttcc 138  Q
    |||||| ||| ||||||| |||||||| ||| ||||||||||||  | |||||||||||||||||||  | ||||||||||||||| ||||||||||  |    
T  26000627 attatacggtgtattgcatattttctcgtaaagtgtgtcattatcgctttacttattgcaattgtgtcattgattaaatcaaaattaaacatagattctc 26000726  T
Q  139 atttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtc 223  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  26000727 atttgtgcactaaaattgaaatttcccttaatattttgtatgagtactgatttgtaataaagtaaagtttagttttagagtggtc 26000811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 38392619 - 38392403
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||||||||||||||||||  |||  || |||||||| | |||||||||||| | | ||| ||||||||||||||  ||||||||||||||    
T  38392619 tcattgaacatttgtgtatttaatccatgtcatgacagattatatgatgtattgcacatttgcccataatgtgtgtcattatatatttacttattgcaat 38392520  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |  ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||| || |||||||||||||| | |    
T  38392519 tgtgtccctgattaaatcaaaattaaacatagattttcatttatgcactaagattgaaatttcccttaatattttgtaagatgactgatttgtaataatg 38392420  T
Q  201 taaagtttagttttaga 217  Q
    |||| ||||||||||||    
T  38392419 taaaatttagttttaga 38392403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 47930657 - 47930433
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||||||||||||||||||   |||||  |||||||||| |||||||| |||   | ||||  ||||||||||  | ||||||||||||||    
T  47930657 tcattgaacatttgtgtatttaatccatgttatatcg-attatatggtgtattgcacctttgtccctaagacgtgtcattattcctttacttattgcaat 47930559  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |   |||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |    
T  47930558 tgtgtccctcattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttaatattttgtataatgactgatttgtaataaag 47930459  T
Q  201 taaagtttagttttagagtggtccac 226  Q
    ||||| ||||||||||||||||||||    
T  47930458 taaagcttagttttagagtggtccac 47930433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 226
Target Start/End: Complemental strand, 7758372 - 7758190
Alignment:
Q  43 tatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccattt 142  Q
    |||||| ||||| |||||| | | ||||||| ||||||||||| ||||||||||||||||||| |   |||||||||||||| ||||||||||  |||||    
T  7758372 tatggtgtattgtacatttgcccataaggtgcgtcattatatctttacttattgcaattgtgtccctaattaaatcaaaattaaacatagattctcattt 7758273  T
Q  143 gtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 226  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||  || ||||| |||||||||||||| |||||    
T  7758272 gtgcactaagattgaaattcccctt-atattttgtatgaagactgatttgtaaaaagataaagcttagttttagagtgctccac 7758190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 229
Target Start/End: Original strand, 51878241 - 51878398
Alignment:
Q  71 gtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaat 170  Q
    |||||| |||||||  |||||||||||||||||||    |||||||| |||||| ||||||||||  ||||| ||||||||||||||||||| | |||||    
T  51878241 gtgtgttattatattgttacttattgcaattgtgtctccgattaaataaaaattaaacatagattctcatttatgcactaagattgaaattctc-ttaat 51878339  T
Q  171 attttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccag 229  Q
    |||||||||||| ||||| ||||||| |||||||||||| ||||||||||  |||||||    
T  51878340 attttgtatgagtactgaattgtaataaggtaaagtttaattttagagtgacccaccag 51878398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 42204405 - 42204530
Alignment:
Q  3 attgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattg 102  Q
    |||||| |||||||||||||||| ||  || |||  |||||||||| ||||||| |||| ||| |||||||||||| |||||| ||||||||||||||||    
T  42204405 attgagcatttgtgtatttaatctatgtcacatcggattatatggtgtattgcatatttactcataaggtgtgtca-tatatctttacttattgcaattg 42204503  T
Q  103 tgttctagattaaatcaaaattcaacat 130  Q
     || || ||||||||||||||| |||||    
T  42204504 agtcct-gattaaatcaaaattaaacat 42204530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 40744262 - 40744202
Alignment:
Q  169 atattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccag 229  Q
    |||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||| |||||    
T  40744262 atattttgtatgaggattgatttgtaataaggtaatgtttagtcttagagtggtctaccag 40744202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 36689674 - 36689733
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||  ||||||||    
T  36689674 ttaatattttgtatgaggacttatttgtaataaagtaaagtttagttttacggtggtcca 36689733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 53811958 - 53811865
Alignment:
Q  10 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgt 103  Q
    |||| ||||||||||||||  ||  ||| |||||||||| |||| |||||||   | ||||||||||||||||||| ||||||| |||||||||    
T  53811958 atttatgtatttaatccatgtcacgtcagattatatggtgtattccacatttgtacataaggtgtgtcattatatctttacttaatgcaattgt 53811865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 31706831 - 31706763
Alignment:
Q  128 catagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaat 196  Q
    ||||||||  ||||||||||||| |||||||| |||| ||||||||||||||| ||| |||||| ||||    
T  31706831 catagattctcatttgtgcactacgattgaaactccctttaatattttgtatgtggattgatttataat 31706763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 47870314 - 47870370
Alignment:
Q  67 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaat 123  Q
    ||||||||||||||||||| |||| ||||||||||| || || ||||||||||||||    
T  47870314 taaggtgtgtcattatatctttacgtattgcaattgagtccttgattaaatcaaaat 47870370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4556598 - 4556702
Alignment:
Q  1 tcattgagtatttgtgtatttaatccatac----catatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattg 96  Q
    ||||||||||||||||||||||||  || |    ||  ||| |||||||||  |||||||||||| ||| ||| ||||||||||||||| |||||||||     
T  4556598 tcattgagtatttgtgtatttaattaattcatgtcacgtcagattatatggcgtattgcacatttgctcataatgtgtgtcattatatctttacttatta 4556697  T
Q  97 caatt 101  Q
    |||||    
T  4556698 caatt 4556702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 11019700 - 11019759
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    |||||||||| || ||||||||||||||||| || |||| |||||| |||||||||||||    
T  11019700 ttaatattttatacgaggactgatttgtaataagataaaatttagtcttagagtggtcca 11019759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 48154513 - 48154454
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||| ||||||||||||||||||||||||| | ||||| |||||| ||| |||||||||    
T  48154513 ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtcca 48154454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 12121279 - 12121217
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    |||||||||||||| |||| | ||||||||| |||||||||||||| ||| |||||| |||||    
T  12121279 ttaatattttgtataaggagttatttgtaataaggtaaagtttagtcttatagtggttcacca 12121217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 43485384 - 43485497
Alignment:
Q  17 tatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaa 116  Q
    |||||||| ||| |||  ||| ||||||||||  |||||| |||| | | |||| |||||||||||||  |||||||||| ||||| || |  |||||||    
T  43485384 tatttaattcatgccacttcagattatatggtgcattgcatatttgcccctaagatgtgtcattatatttttacttattgtaattgagtccctgattaaa 43485483  T
Q  117 tcaaaattcaacat 130  Q
    | |||||| |||||    
T  43485484 ttaaaattaaacat 43485497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 54606763 - 54606892
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||||||||||||||  ||  ||| ||| || ||| ||| |||||||||||| ||| || ||||||    |||||  ||||||||||||||    
T  54606763 tcattgaacatttgtgtatttaatgtatgtcatgtcaaatcatacggtgtattgcacatttactcatacggtgtgctgctatatttttacttattgcaat 54606862  T
Q  101 tgtgttctagattaaatcaaaattcaacat 130  Q
    ||||  || |||||||| |||||| |||||    
T  54606863 tgtgcccttgattaaattaaaattaaacat 54606892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 11872740 - 11872796
Alignment:
Q  172 ttttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    |||| |||||||||||||| ||||| | | |||||||||  ||||||||||||||||    
T  11872740 ttttctatgaggactgattcgtaataaagaaaagtttagacttagagtggtccacca 11872796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18272215 - 18272155
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattt 61  Q
    |||||||  ||||||||||||||| |||| ||  ||| |||||||||| ||||||||||||    
T  18272215 tcattgaacatttgtgtatttaattcatatcaagtcagattatatggtgtattgcacattt 18272155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13876910 - 13876681
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    ||||||||||||||||||||||||| || |||  |||||| ||||||| |||| ||||||| | | ||| ||||||||||||||  ||| ||||||||||    
T  13876910 tcattgagtatttgtgtatttaatcaatgccacgtcatatcatatggtgtattacacatttgcccataaagtgtgtcattatatttttagttattgcaat 13876811  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||| | || ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||| |||    
T  13876810 tgtatccttgattaaatcaaaattaaacatagattcccatttgtgcactaatattgaaattccccttaatattttgtatgagtaccgatttgtaataagg 13876711  T
Q  201 taaagtttagttttagagtggtccaccagc 230  Q
    ||||||||||||||||||||||||||||||    
T  13876710 taaagtttagttttagagtggtccaccagc 13876681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27118387 - 27118616
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||| ||| |||| |||||||||||||| |||  |||||||||||| | ||||||||||||  || ||||||||||||||||||| ||||||||||||||    
T  27118387 tcatggagcatttatgtatttaatccatgccacgtcatattatatgatgtattgcacatttgttcataaggtgtgtcattatatctttacttattgcaat 27118486  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |  ||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  27118487 tgtgtccctgattaaatcaaaattaaacatagattctcattcgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaataagg 27118586  T
Q  201 taaagtttagttttagagtggtccaccagc 230  Q
    |||||| ||||||||||||| |||||||||    
T  27118587 taaagtatagttttagagtgatccaccagc 27118616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15964157 - 15964378
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    ||||| || |||||||||||||||| ||  ||  ||| ||||||| || ||||||||||||   | |||| ||||||||||||| |||||| ||  ||||    
T  15964157 tcattaagcatttgtgtatttaatctatgtcacgtcaaattatatagtgtattgcacatttgtccataagatgtgtcattatatacttactgatatcaat 15964256  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |  ||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  15964257 tgtgtccctgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataagg 15964356  T
Q  201 taaagtttagttttagagtggt 222  Q
    |||| |||||||||||||||||    
T  15964357 taaaatttagttttagagtggt 15964378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16127577 - 16127800
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||||||||||||||||||  ||  ||| |||||||| | |||||||||||| ||| ||||||||||||||||||  ||||||||||||||    
T  16127577 tcattgatcatttgtgtatttaatccatgacacgtcagattatatgatgtattgcacatttactcataaggtgtgtcattatatgtttacttattgcaat 16127676  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    |||   |  || ||||||||| || ||||||||||  |||||||||||||||||||| |||||||||||||||||  |||||||||| |||||||| |||    
T  16127677 tgtc--cctgaataaatcaaa-ttaaacatagattctcatttgtgcactaagattgagattccccttaatattttaaatgaggactggtttgtaataagg 16127773  T
Q  201 taaagtttagttttagagtggtccacc 227  Q
    ||||||||||||||| ||| |||||||    
T  16127774 taaagtttagttttaaagtagtccacc 16127800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 10758291 - 10758062
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||| ||||||||||||||| ||| ||| |||| |||||||||| ||||| |||||| |   ||  ||||||||||||||  ||||||||||||||    
T  10758291 tcattgagcatttgtgtatttaattcatgccacatcagattatatggtgtattgaacatttgcctatagtgtgtgtcattatatttttacttattgcaat 10758192  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |   |||||||||||||| |||||| |||  |||||||||||||||||||||||| | ||||||||||| ||||| ||||||  |||||| | |    
T  10758191 tgtgtccctaattaaatcaaaattaaacatatattctcatttgtgcactaagattgaaatttctcttaatattttatatgatgactgaagtgtaataaag 10758092  T
Q  201 taaagtttagttttagagtggtccaccagc 230  Q
     ||| ||||||||||||||| |||||||||    
T  10758091 caaaatttagttttagagtgatccaccagc 10758062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 25943293 - 25943482
Alignment:
Q  39 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttcc 138  Q
    |||||||||| |||||||| ||| ||  ||| | ||| ||||||||| ||| |||||| |||| |||| | ||||||||||||||| ||||||||||  |    
T  25943293 attatatggtgtattgcacgtttgctgataatgcgtgccattatatctttatttattgtaattttgtttttgattaaatcaaaattaaacatagattctc 25943392  T
Q  139 atttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    ||||||||| ||||||||||||| | |||||||||||||| || |||||||||||||| || |||| ||||||  |||||||||||||||    
T  25943393 atttgtgcaataagattgaaatttctcttaatattttgtacgatgactgatttgtaataagataaaatttagtagtagagtggtccacca 25943482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 31805063 - 31804854
Alignment:
Q  13 tgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagat 112  Q
    ||||||||||||| || |||  | | |||||||||| |||||||||||| |   |||  | |||||||||||| |||||| ||| ||||||||    |||    
T  31805063 tgtgtatttaatctatgccacgttagattatatggtgtattgcacatttgccgataacatatgtcattatatctttacttcttgaaattgtgtcactgat 31804964  T
Q  113 taaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagtt 212  Q
    |||||||||||| ||||||||||  ||||| |||||||||||||||||| ||||||||||||| |||||| | || |||||||| |||||||||||| ||    
T  31804963 taaatcaaaattaaacatagattctcatttatgcactaagattgaaatttcccttaatattttatatgagaattggtttgtaataaggtaaagtttaatt 31804864  T
Q  213 ttagagtggt 222  Q
    ||| ||||||    
T  31804863 ttatagtggt 31804854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 3120727 - 3120626
Alignment:
Q  127 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 226  Q
    |||||||||  |||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  3120727 acatagattcacatttgtgcattaaaattgaaataccccttaatatattgtatgaggactgatttgtaataaggtaaagtttaatcttagagtggtccac 3120628  T
Q  227 ca 228  Q
    ||    
T  3120627 ca 3120626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 47554938 - 47555034
Alignment:
Q  127 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtc 223  Q
    |||||||||  |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||||| | |||||||||||    
T  47554938 acatagattctcatttgtgcactaagatttaaattcctcttaatattttgtatgatgactgatttgtaataaggtaaagtttactcttagagtggtc 47555034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 16135528 - 16135608
Alignment:
Q  149 taagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccag 229  Q
    |||||||||||||| | ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  16135528 taagattgaaattctcattaatattttgtatgagaactgatttgtaatagggtaaagtttagttttagagtggtccaccag 16135608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 16132534 - 16132675
Alignment:
Q  3 attgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattg 102  Q
    |||||| ||||||||||||||||||| | |  | | |||||| ||| |||||||||||| | | ||| ||||||||||||||| ||||||||||||||||    
T  16132534 attgagcatttgtgtatttaatccatgcaacgtgagattatacggtgtattgcacatttgcacataatgtgtgtcattatatctttacttattgcaattg 16132633  T
Q  103 tgt-tctagattaaatcaaaattcaacatagatttccatttgt 144  Q
    ||| ||| ||||||||||||||| ||||||||||  |||||||    
T  16132634 tgtctct-gattaaatcaaaattaaacatagattctcatttgt 16132675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 3120328 - 3120238
Alignment:
Q  138 catttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    |||||||||||||||||| |||| || |||||||  ||||||| ||||||||||||||| | |||||||| ||| ||||| ||||||||||    
T  3120328 catttgtgcactaagattaaaatacctcttaataaattgtatgtggactgatttgtaataaagtaaagttaagtcttagaatggtccacca 3120238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 421450 - 421579
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||||||||||||||  ||  ||| ||| ||||||  || |||||||||||| ||  || | |||  ||||||||| ||||| ||||||||    
T  421450 tcattgaacatttgtgtatttaatgtatgtcatgtcaaattatacagtttattgcacatttacttatacgatgttccattatatctttactaattgcaat 421549  T
Q  101 tgtgttctagattaaatcaaaattcaacat 130  Q
    ||||| || ||||||||||||||| |||||    
T  421550 tgtgtccttgattaaatcaaaattaaacat 421579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 28012123 - 28012216
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttat 94  Q
    |||||||||||||||||||||||| |||  || || | |||||||||| |||||||||||| ||| |||| ||||  | |||||| ||||||||    
T  28012123 tcattgagtatttgtgtatttaatgcatgtcacattaaattatatggtgtattgcacatttgctcctaagatgtgctactatatctttacttat 28012216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 43579463 - 43579515
Alignment:
Q  126 aacatagatttccatttgtgcactaagattgaaattccccttaatattttgta 178  Q
    ||||||||||   |||||||||||||||||||||||| |||||||||||||||    
T  43579463 aacatagattcttatttgtgcactaagattgaaattctccttaatattttgta 43579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 422205 - 422264
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||||  ||||||||||||    
T  422205 ttaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagagtggtcca 422264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 21263950 - 21263907
Alignment:
Q  87 ttacttattgcaattgtgttctagattaaatcaaaattcaacat 130  Q
    ||||||||||||||||||| || ||||||||||||||| |||||    
T  21263950 ttacttattgcaattgtgtccttgattaaatcaaaattaaacat 21263907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 17695930 - 17695870
Alignment:
Q  69 aggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaaca 129  Q
    ||||||||||||||| | |||||||||| ||||| ||  | ||||||||||||||| ||||    
T  17695930 aggtgtgtcattataactttacttattgtaattgagtctttgattaaatcaaaattaaaca 17695870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 41643929 - 41644159
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||| ||||||||||||||| |||  ||  ||| |||||||||| ||||||||||||  || ||||||||||||||||||| ||||||||||||||    
T  41643929 tcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacatttgatcataaggtgtgtcattatatctttacttattgcaat 41644028  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaata-ttttgtatgaggactgatttgtaatgag 199  Q
    ||| | |  ||||||||||||||| ||||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  41644029 tgtatccctgattaaatcaaaattaaacatagtttctcatttgtgcactaagattgaaattccccttaatatttttgtatgaggactgatttgtaataag 41644128  T
Q  200 gtaaagtttagttttagagtggtccaccagc 230  Q
    ||| |||||||||||||||||||||||||||    
T  41644129 gtagagtttagttttagagtggtccaccagc 41644159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 15650913 - 15651131
Alignment:
Q  9 tatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttct 108  Q
    ||||||||||||||||||||| ||  | | |||||||||| |||| ||||||| | | ||||||||||||||||||| |||||||||||||||||||||     
T  15650913 tatttgtgtatttaatccatatcacgtaagattatatggtgtatttcacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgttcc 15651012  T
Q  109 agattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagttt 208  Q
     ||||||||||||||| |||||||| |  |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||    
T  15651013 tgattaaatcaaaattaaacatagaatctcatttgtgcactaaaattgaaattctcctaaatattttgtatgaggactgatttgtaataaagtaaagttt 15651112  T
Q  209 agttttagagtggtccacc 227  Q
    | |||||||||||||||||    
T  15651113 aattttagagtggtccacc 15651131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 18059351 - 18059131
Alignment:
Q  3 attgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattg 102  Q
    ||||| |||||||||||||||| |||  ||| ||| |||||||||| ||||||| ||||   | ||| |||||| |||||||| ||||||||||||||||    
T  18059351 attgaatatttgtgtatttaattcatgtcatgtcagattatatggtgtattgcatatttatccataatgtgtgttattatatctttacttattgcaattg 18059252  T
Q  103 tgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggta 202  Q
    ||| || ||||| || |||||| || |||||||  | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||    
T  18059251 tgtccttgattagattaaaattaaatatagattctcgtttgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaacaaggta 18059152  T
Q  203 aagtttagttttagagtggtc 223  Q
    |||||||||||||||||||||    
T  18059151 aagtttagttttagagtggtc 18059131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6177832 - 6178058
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||| ||||||||||||||| |||  ||  ||| |||||||||| |||||| ||||| | | |||||| |||||||||||  ||||||||| ||||    
T  6177832 tcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcgcatttgcccataaggtatgtcattatatatttacttattccaat 6177931  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |  ||||||||||||||  ||||||||||  |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||| |||    
T  6177932 tgtgtccctgattaaatcaaaata-aacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtacgatgactgatttgtaataagg 6178030  T
Q  201 taaagtttagttttagagtggtccacca 228  Q
    |||||||||||| |||||||||||||||    
T  6178031 taaagtttagttctagagtggtccacca 6178058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 27139011 - 27138783
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  ||||||||||| |||||||  ||  ||| |||||| ||| ||||||| |||| | | ||| ||||||||||||||| ||||   |||||||    
T  27139011 tcattgatcatttgtgtatt-aatccatgtcacgtcagattatacggtgtattgcatatttgcccataaagtgtgtcattatatctttacgggttgcaat 27138913  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |  ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||    
T  27138912 tgtgtccctgattaaatcaaaattaaacatagattcccatttgtgcactaagattgaaattcaccttaatattttgcatgaggacttatttgtaataagg 27138813  T
Q  201 taaagtttagttttagagtggtccaccagc 230  Q
    |||| |||| ||||||||| ||||| ||||    
T  27138812 taaaatttaattttagagtagtccatcagc 27138783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 18947511 - 18947372
Alignment:
Q  91 ttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatt 190  Q
    |||| |||||||||| |  ||||||||||||| | ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18947511 ttatagcaattgtgtccctgattaaatcaaaagtaaacatagattctcatttgtgcattaagattgaaattccccttaatattttgtatgaggactgatt 18947412  T
Q  191 tgtaatgaggtaaagtttagttttagagtggtccaccagc 230  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  18947411 tgtaataaggtaaagtttagttttagagtggtacaccagc 18947372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 230
Target Start/End: Complemental strand, 39788530 - 39788372
Alignment:
Q  72 tgtgtcattatatccttacttattgcaattgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaat 170  Q
    |||||||||||||  ||||||| ||||||| ||| ||| | ||||||||||||| ||||||||||   ||||||||||||| ||||||||||||||||||    
T  39788530 tgtgtcattatattgttacttactgcaattatgtctctgg-ttaaatcaaaattaaacatagattctgatttgtgcactaaaattgaaattccccttaat 39788432  T
Q  171 attttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagc 230  Q
    |||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  39788431 atttcgtatgagaactgatttgtaataaggtaaagtttatttttagagtggtccaccagc 39788372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 18779392 - 18779179
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctct--taaggtgtgtcattatatccttacttattgca 98  Q
    |||||||| ||||||||||||||| |||  || |||| |||||||||| |||||||||||| |  |  ||| |||||| ||| |||| ||||||||||||    
T  18779392 tcattgagcatttgtgtatttaattcatgtcacatcagattatatggtttattgcacatttgccataataaagtgtgttattttatctttacttattgca 18779293  T
Q  99 attgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatga 198  Q
    |||||||||  |||||||||||| || ||||||||||  |||||||||||||||||||||||| ||        ||| ||||| |||||||||||||| |    
T  18779292 attgtgttcctgattaaatcaaagttaaacatagattctcatttgtgcactaagattgaaatttcc--------tttatatgacgactgatttgtaataa 18779201  T
Q  199 ggtaaagtttagttttagagtg 220  Q
    ||||||||||||||||||||||    
T  18779200 ggtaaagtttagttttagagtg 18779179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 34441910 - 34441729
Alignment:
Q  3 attgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattg 102  Q
    ||||| |||||||||||||||| |||  ||  ||  |||||||||| |||||||||||| | | |||| |||||| ||||||| ||||||||||||||||    
T  34441910 attgaatatttgtgtatttaattcatgtcacgtc--attatatggtgtattgcacatttgcccataagatgtgtcgttatatctttacttattgcaattg 34441813  T
Q  103 tgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactg 187  Q
    ||| |  ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  34441812 tgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaaaattgaaattcccctt-atattttgtatgaggactg 34441729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 38250052 - 38249900
Alignment:
Q  74 tgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatatt 173  Q
    |||||||||||| ||||||||||||||||||| |  ||||||||||||||| | ||  |||| | ||||| || ||||||||||||||||||||||||||    
T  38250052 tgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaatca--gattccaatttgcgctctaagattgaaattccccttaatatt 38249955  T
Q  174 ttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagc 230  Q
      ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  38249954 --gtatgaggactgatttgtaacaaggtaaaatttagttttagagtggtccaccagc 38249900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 17244935 - 17244836
Alignment:
Q  127 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 226  Q
    |||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  17244935 acatagattctcatttgtgcactaagattgaaattttccttaatattttgtatgaggagtgatttgtaataaggtaaagtttagttttagagtggtccac 17244836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 19093640 - 19093734
Alignment:
Q  130 tagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcc 224  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  19093640 tagattcccatttgtgcagtaagattgaaattctccttaatattttgtaagaggactgatttgtaataaggtaaagtttagttttagagtggtcc 19093734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 41713257 - 41713445
Alignment:
Q  39 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttcc 138  Q
    |||||||||| | || ||||||| | | |||| |||||||||||||   |||||||| ||||||| | |   |||||||||||||| ||||||||||  |    
T  41713257 attatatggtgtgttacacatttgcccataagatgtgtcattatatgtatacttattacaattgtttccctaattaaatcaaaattaaacatagattctc 41713356  T
Q  139 atttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    | ||||||||||| | |||||||||||||| |||||||| |||||||||||||||||| || ||||  ||||||||||||||||||||||    
T  41713357 acttgtgcactaaaaatgaaattcccctta-tattttgtgtgaggactgatttgtaataagataaaacttagttttagagtggtccacca 41713445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 42005447 - 42005667
Alignment:
Q  2 cattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaatt 101  Q
    |||||| ||||||| ||||||||||||  ||  ||  |||||||||| ||||||||| || | | ||||||||||||||| ||| |||||||||| ||||    
T  42005447 cattgaatatttgtttatttaatccatgtcacgtc--attatatggtgtattgcaca-ttgcccataaggtgtgtcattacatctttacttattgtaatt 42005543  T
Q  102 gtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||  |  ||||||||||||||| ||||||||||  ||||||||||||||||||||||||  |||| ||||||||||||||  |||||||||||| |      
T  42005544 gtgtcccctgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattttcctt-atattttgtatgagagctgatttgtaataaaa 42005642  T
Q  201 taaagtttagttttagagtggtcca 225  Q
    ||||  ||| ||||| |||||||||    
T  42005643 taaaacttaattttaaagtggtcca 42005667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 19073415 - 19073638
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctct-taaggtgtgtcattatatccttacttattgcaa 99  Q
    |||||||| |||||||||||||||||||  ||  ||| |||||||||| |||| |||||||  ||| ||||||||||||||||||  |||||||||| ||    
T  19073415 tcattgagaatttgtgtatttaatccatgtcacgtcagattatatggtgtattccacatttg-tctataaggtgtgtcattatatatttacttattgaaa 19073513  T
Q  100 ttgtgttctagattaaatcaaaattcaacatagatt-tccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatga 198  Q
    |||||| |  |||||||||||| || |||||||||| ||  ||| |||||      ||||||| || |||||||||| || ||||||||||||||||| |    
T  19073514 ttgtgtccctgattaaatcaaagttaaacatagattctcattttttgcac------tgaaatt-cctttaatattttatacgaggactgatttgtaataa 19073606  T
Q  199 ggtaaagtttagttttagagtggtccaccagc 230  Q
    |||||| |||||||||| |||||| |||||||    
T  19073607 ggtaaaatttagttttaaagtggttcaccagc 19073638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 18514597 - 18514494
Alignment:
Q  127 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 226  Q
    |||||||||  |||||||||||||||||||||||| || |||||||||||||||| || |||||| |||| | |||||||| ||| ||| ||||||||||    
T  18514597 acatagattctcatttgtgcactaagattgaaatttccattaatattttgtatgatgattgatttataataaagtaaagttcagtcttatagtggtccac 18514498  T
Q  227 cagc 230  Q
    ||||    
T  18514497 cagc 18514494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 34441728 - 34441644
Alignment:
Q  143 gtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||||||| |||| |||||||    
T  34441728 gtgcactaaaattgaaattcccctta-tattttgtatgaggactgatttgtaataagataaagcttagttttaaagtgatccacca 34441644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 30844918 - 30845033
Alignment:
Q  15 tgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgt-tctagatt 113  Q
    ||||||||||||||  ||  ||| |||||||| ||||||||||||||   | |||| |||||||||| ||| |||||||||||| ||| || |||| |||    
T  30844918 tgtatttaatccatgtcacgtcagattatatgatatattgcacatttgtccataagatgtgtcattaaatctttacttattgcatttgagtctcta-att 30845016  T
Q  114 aaatcaaaattcaacat 130  Q
    ||||||||||| |||||    
T  30845017 aaatcaaaattaaacat 30845033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 27355193 - 27355254
Alignment:
Q  169 atattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagc 230  Q
    ||||||||||| | |||||||||||| |||   |||||||||| ||||||||||||||||||    
T  27355193 atattttgtattatgactgatttgtagtgaatgaaagtttagtcttagagtggtccaccagc 27355254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 40912516 - 40912471
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagt 211  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||||    
T  40912516 ttaatattttgtatgaggactgatttgtaataaagtaaaatttagt 40912471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 58097 - 58204
Alignment:
Q  15 tgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagatta 114  Q
    |||||||||| |||  || |||| |||||||||| ||||||||||||  || || |||||| ||  ||||  ||||||||||||||||||| || |||||    
T  58097 tgtatttaattcatgtcagatcaaattatatggtgtattgcacatttgttcatacggtgtgccacaatatttttacttattgcaattgtgtcct-gatta 58195  T
Q  115 aatcaaaat 123  Q
    ||| |||||    
T  58196 aattaaaat 58204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 32652621 - 32652664
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagttta 209  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||    
T  32652621 ttaatattttgtatgaggactgatttgtaataaagtaaaattta 32652664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 45411976 - 45411917
Alignment:
Q  169 atattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    ||||||||||| | |||||||||||| ||| | ||| |||||| ||||||||||||||||    
T  45411976 atattttgtattatgactgatttgtagtgaaggaaaatttagtcttagagtggtccacca 45411917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 196
Target Start/End: Original strand, 7565511 - 7565541
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaat 196  Q
    |||||||||||||||||||||||||||||||    
T  7565511 ttaatattttgtatgaggactgatttgtaat 7565541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 7553480 - 7553540
Alignment:
Q  70 ggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacat 130  Q
    ||||| ||| |||||  |||||||||||||||||||  | ||||||||||||||| |||||    
T  7553480 ggtgtatcactatatttttacttattgcaattgtgtcattgattaaatcaaaattaaacat 7553540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2266847 - 2266619
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctct-taaggtgtgtcattatatccttacttattgcaa 99  Q
    |||||||| ||||||||||||||||||| |||  | | |||| ||||| |||| |||||||  ||| ||||||||||||||||||| |||||||||||||    
T  2266847 tcattgagcatttgtgtatttaatccatgccacgttagattacatggtgtattacacatttg-tctataaggtgtgtcattatatctttacttattgcaa 2266749  T
Q  100 ttgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgag 199  Q
     | ||   | ||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  2266748 ctatgactttgattaaatcaaaattaaacatagattcccatttgtgcactaagattgaaatttcccttaatattttgtatgaggactgatttgtaataat 2266649  T
Q  200 gtaaagtttagttttagagtggtccaccagc 230  Q
    |||||||||| |||||||| |||||||||||    
T  2266648 gtaaagttta-ttttagaggggtccaccagc 2266619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 2570605 - 2570764
Alignment:
Q  71 gtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaat 170  Q
    ||||||||||||||| ||| ||||||||||||||| |   |||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||    
T  2570605 gtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttgtgcactaagattgaaattcaccttaat 2570704  T
Q  171 attttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagc 230  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  2570705 attttgtttgaggaatgatttgtaataaggtaaagtttagttttagagtggtccaccagc 2570764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 9743654 - 9743875
Alignment:
Q  10 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttcta 109  Q
    |||||||||||||||||||   |  |||||||||||||| |||||||||||||  | ||| |||| |||||| ||| ||||||||||||||| ||||||     
T  9743654 atttgtgtatttaatccatgtaacgtcatattatatggtgtattgcacatttttccataaagtgtttcattaaatctttacttattgcaattatgttctt 9743753  T
Q  110 gattaaatcaaaattcaacatagat-ttc-catttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtt 207  Q
    ||||||||||||||| |||||| || ||| |||||||||||||||||| |  |||||||||||||||||||||||||||| |||||||| | ||||| ||    
T  9743754 gattaaatcaaaattaaacatatatattctcatttgtgcactaagatttatgttccccttaatattttgtatgaggactggtttgtaataatgtaaaatt 9743853  T
Q  208 tagttttagagtggtccaccag 229  Q
    ||||||||||||| ||||||||    
T  9743854 tagttttagagtgatccaccag 9743875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 17612457 - 17612618
Alignment:
Q  67 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccct 166  Q
    ||||||||||||||  ||| ||||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||  |||||||||||||||||||    
T  17612457 taaggtgtgtcattgcatctttacttattgcaattatgtcctagattaaatcaaaattaaacatagattgccatttgtgtgctaagattgaaattcccct 17612556  T
Q  167 taatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    | ||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  17612557 ttatattttctatgaggactaatttgtaataaggtaaaatttagttttagagtggtccacca 17612618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 69 - 228
Target Start/End: Original strand, 2707998 - 2708156
Alignment:
Q  69 aggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccctta 168  Q
    ||||||||||||||||| |||||||||||||||| || |  ||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||||||     
T  2707998 aggtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaacatggattctcatttgtgcactaagattgaaattcccctt- 2708096  T
Q  169 atattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
     |||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||    
T  2708097 ctattttgtatgagggctgatttgtaataagataaagcttagttttagagtggtccacca 2708156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1012353 - 1012569
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaa- 99  Q
    |||| |||||||||||||||||||||||  ||  ||| |||||||||| |||||||||||| | | ||||||||||||||||||| |||||||||||||     
T  1012353 tcatcgagtatttgtgtatttaatccatgtcacgtcagattatatggtgtattgcacatttgcccataaggtgtgtcattatatctttacttattgcaat 1012452  T
Q  100 ttgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgag 199  Q
    |||||| |  ||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||          ||||| || ||||||||||| ||    
T  1012453 ttgtgtccctgattaaatcaaaattaaacatagattcctatttgtgcactaaaattgaaattcccct----------tatgaagattgatttgtaataag 1012542  T
Q  200 gtaaagtttagttttagagtggtccac 226  Q
    ||||| |||||||||||| ||||||||    
T  1012543 gtaaaatttagttttagaatggtccac 1012569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 54995781 - 54995613
Alignment:
Q  10 atttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttcta 109  Q
    ||||| |||||||||||||  ||| |||  ||||||| | ||||||||||||   | ||| ||||||| ||||||| ||||||||||||||||||| |      
T  54995781 atttgcgtatttaatccatgtcatgtcaggttatatgatgtattgcacatttgtccataatgtgtgtctttatatctttacttattgcaattgtgtccct 54995682  T
Q  110 gattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgta 178  Q
    ||||||||||||||| || |||||||   ||||||| ||||||||||||||||||| ||||||||||||    
T  54995681 gattaaatcaaaattaaatatagattcttatttgtgtactaagattgaaattccccctaatattttgta 54995613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 49878858 - 49878961
Alignment:
Q  127 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 226  Q
    ||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||| ||||||||    
T  49878858 acataaattttcatttgtgcattaagattgaaatttcccttaatattttgtatgatgactgatttataataaggtaaagtttagtcttagaatggtccac 49878957  T
Q  227 cagc 230  Q
    ||||    
T  49878958 cagc 49878961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 22729775 - 22729896
Alignment:
Q  8 gtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttc 107  Q
    ||||||||||||||||| ||| ||| |||| |||||| ||| |||||||||||| ||| || |||||| || |||||| | ||||||||||| ||||| |    
T  22729775 gtatttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacatttgctcatatggtgtgccactatatcttaacttattgcaactgtgtcc 22729874  T
Q  108 tagattaaatcaaaattcaacat 130  Q
    | |||| |||||||||| |||||    
T  22729875 t-gattgaatcaaaattaaacat 22729896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 22756922 - 22756794
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||| ||| |||||||||||| ||| ||  | ||| || |||||| ||||||||| ||||    
T  22756922 tcattgagtatttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacatttgctcatacagcgtgccactatatctttacttattccaat 22756823  T
Q  101 tgtgttctagattaaatcaaaattcaacat 130  Q
    || || || |||| |||||||||| |||||    
T  22756822 tgcgtcct-gattgaatcaaaattaaacat 22756794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 51204650 - 51204724
Alignment:
Q  11 tttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatc 85  Q
    ||||||||||||||||||  || |||| ||||||||||  ||||||||||| ||  |||||||||||||||||||    
T  51204650 tttgtgtatttaatccatgtcacatcagattatatggtgcattgcacatttgctaataaggtgtgtcattatatc 51204724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 54995068 - 54995010
Alignment:
Q  170 tattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    ||||||||||||||||||||||||||| | |||||  ||||||||||||||||| ||||    
T  54995068 tattttgtatgaggactgatttgtaataaagtaaaagttagttttagagtggtcgacca 54995010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 28292486 - 28292430
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggt 222  Q
    ||||||||||||||||  | ||||||||||| |||||||||||||| ||||||||||    
T  28292486 ttaatattttgtatgattattgatttgtaataaggtaaagtttagtcttagagtggt 28292430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 28293224 - 28293124
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||||||   |||||||||||||| | | |||| |||||||| | |||||||||||| |   |||| ||||| |||||||| ||||||||||||||    
T  28293224 tcattgagtatcaatgtatttaatccatgctacatcaaattatatgatgtattgcacatttacctataagatgtgttattatatctttacttattgcaat 28293125  T
Q  101 t 101  Q
    |    
T  28293124 t 28293124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 33036155 - 33036064
Alignment:
Q  39 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgt-tctagattaaatcaaaattcaacat 130  Q
    ||||||| || |||||||||||| |   |||||| |||||||||||| |||||||||||||||| || ||| ||||||||||||||| |||||    
T  33036155 attatattgtgtattgcacatttgcctataaggtttgtcattatatctttacttattgcaattgagtctct-gattaaatcaaaattaaacat 33036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 51959922 - 51959990
Alignment:
Q  17 tatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatc 85  Q
    ||||||||| ||| ||  ||| |||||||||| |||||||||||| | | ||| |||||||||||||||    
T  51959922 tatttaatctatatcacgtcagattatatggtgtattgcacatttgcccataaagtgtgtcattatatc 51959990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 67 - 230
Target Start/End: Original strand, 3038529 - 3038691
Alignment:
Q  67 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccct 166  Q
    ||||||||||||||||||| ||||||||||||||||||| |  ||||||||||||||| ||| |||||| |||||| |||||||||||||||||| ||||    
T  3038529 taaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacttagattcccatttatgcactaagattgaaatt-ccct 3038627  T
Q  167 taatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagc 230  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||    
T  3038628 taatattttgtatgatgattgatttgtaataaggtaaagtttagttttagagtggtccaccagc 3038691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4108903 - 4108679
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    ||||||| ||||||||||||||||  || |||  ||  |||||||||| |||||||||||| | | ||||||||||| ||||||| ||||||||||||||    
T  4108903 tcattgaatatttgtgtatttaattaatgccacgtc--attatatggtgtattgcacatttgcccataaggtgtgtcgttatatctttacttattgcaat 4108806  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |  ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| ||     
T  4108805 tgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaaaattgaaattcccctt-atattttgtatgaagactgttttgtaataaga 4108707  T
Q  201 taaagtttagttttagagtggtccacca 228  Q
    ||||| ||||||||| ||||||||||||    
T  4108706 taaagcttagttttaaagtggtccacca 4108679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 67 - 215
Target Start/End: Complemental strand, 6267430 - 6267282
Alignment:
Q  67 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccct 166  Q
    |||||||||| |||||||| ||||||||||||||| ||| || ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  6267430 taaggtgtgttattatatctttacttattgcaattatgtccttgattaaatcaaaattaaacatagatttgcatttgtgcactaagattgaaattcccct 6267331  T
Q  167 taatattttgtatgaggactgatttgtaatgaggtaaagtttagtttta 215  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||||    
T  6267330 taatattttgtatgatgactgatttgtaataagataaagtttagtttta 6267282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 7290814 - 7290997
Alignment:
Q  39 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttcc 138  Q
    |||||||||  ||||  |||||||| | |||| ||| | |||||||| ||||||||||||||||| |||  |||||||||||||||  |||||||||| |    
T  7290814 attatatggcgtattagacattttcccataagatgtattattatatctttacttattgcaattgtattcctgattaaatcaaaattagacatagattttc 7290913  T
Q  139 atttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggt 222  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  7290914 atttgtgcactaagattgaaattcctcttaatattttgtatgaggattgatttgtaataagataaagtttagttttagagtggt 7290997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 229
Target Start/End: Complemental strand, 18756620 - 18756430
Alignment:
Q  39 attatatggtatattgcacattttctct-taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttc 137  Q
    |||||||||| ||||||||||||  ||| |||| |||||||||||||| ||||||||||||||||||| |  |||| ||| |||| | | |||| ||| |    
T  18756620 attatatggtctattgcacatttg-tctataagatgtgtcattatatctttacttattgcaattgtgtccatgattcaattaaaagtaagcatatattcc 18756522  T
Q  138 catttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccag 229  Q
    | ||||||||||||||||  |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  18756521 cctttgtgcactaagattttaattccccttaatattttgtatgaggacagatttgtaataaggtaaagattagttttagagtggtccaccag 18756430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 23176690 - 23176554
Alignment:
Q  88 tacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactg 187  Q
    |||||||||||||||||| |  ||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||     
T  23176690 tacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattcccctt-atattttgtatgaggacta 23176592  T
Q  188 atttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||||||| || ||||| |||||||||||||||||||    
T  23176591 atttgtaataagataaagcttagttttagagtggtcca 23176554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 30651108 - 30651005
Alignment:
Q  127 acatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 226  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| |||||||||||| | ||||||||||||||    
T  30651108 acatagattttcatttgtgcactaagattaaaattcctcttaatatttagtatgatgactgatttgtaataaggtaaagtttaatcttagagtggtccac 30651009  T
Q  227 cagc 230  Q
    ||||    
T  30651008 cagc 30651005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 28220898 - 28220797
Alignment:
Q  126 aacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||||||||  | ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  28220898 aacatagattctcttttgtacactaagattgaaattcccctta-tattttgtatgaggactgatttgtaataagataaagcttagttttagagtggtcca 28220800  T
Q  226 cca 228  Q
    |||    
T  28220799 cca 28220797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 34685969 - 34686054
Alignment:
Q  138 catttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtc 223  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||    
T  34685969 catttgtgcactaagactgaaatttcccttaatattttgtatgaggactgatttgtaataaagtaaagtttagtcttagagtggtc 34686054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 34463473 - 34463575
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||| ||||||||||||||||||  ||| ||||||| || |||||||| |||   | || |||||||||||||||| |||||||||| |||    
T  34463473 tcattgaaaatttatgtatttaatccataccacttcacattatattgtgtattgcacgtttgaacatatggtgtgtcattatatctttacttattgtaat 34463572  T
Q  101 tgt 103  Q
    |||    
T  34463573 tgt 34463575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 35735933 - 35735844
Alignment:
Q  39 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaaca 129  Q
    |||||||||| |||||||||||| ||| ||||||||| || |||||| |||| |||| ||||||||| || |||||||| |||||| ||||    
T  35735933 attatatggtgtattgcacatttgctcataaggtgtgccactatatctttacctattacaattgtgtcct-gattaaataaaaattaaaca 35735844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 30381067 - 30381002
Alignment:
Q  39 attatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtg 104  Q
    ||||||| |||||||||| |||| ||  |||| |||||||||||||| |||||||||  |||||||    
T  30381067 attatatcgtatattgcatatttacttataagatgtgtcattatatctttacttattataattgtg 30381002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11084143 - 11083924
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    ||||||| ||||| ||||||||||||||  ||  ||  |||||||||| |||| ||||||| | | ||||||||||||||||||| ||||||||||||||    
T  11084143 tcattgaatatttatgtatttaatccatgtcacgtc--attatatggtgtattacacatttgcccataaggtgtgtcattatatctttacttattgcaat 11084046  T
Q  101 tgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgag 199  Q
    ||||| ||| ||||||||||||||| ||||||||||  ||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  11084045 tgtgtctct-gattaaatcaaaattaaacatagattctcatttgttcattaagattgaaattcccctt-atattttgtataaggactgatttgtaataag 11083948  T
Q  200 gtaaagtttagttttagagtggtc 223  Q
     ||||| |||||||||||||||||    
T  11083947 ataaagcttagttttagagtggtc 11083924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 30341124 - 30341276
Alignment:
Q  44 atggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttg 143  Q
    ||||| ||||| |||||| | | |||| |||||||||||||| | |||||||||||||||||||  ||||||||||||||| || ||||||| ||||| |    
T  30341124 atggtgtattgtacatttgcccataagttgtgtcattatatcttcacttattgcaattgtgttcatgattaaatcaaaattaaatatagattcccattag 30341223  T
Q  144 tgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30341224 tgcactaagattgaaattccccttaatattttgtatgaggactaatttgtaat 30341276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 34993921 - 34994117
Alignment:
Q  34 atcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacataga 133  Q
    |||| |||||||||| ||||||||||||   | ||| || ||| |||||||| ||||||||| ||||||||| || ||||||||||||||| ||||||||    
T  34993921 atcagattatatggtgtattgcacatttgtccataatgtatgttattatatctttacttattacaattgtgtccttgattaaatcaaaattaaacataga 34994020  T
Q  134 tttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagc 230  Q
    ||  ||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||||| || || | |||||||||||| | ||||||||||    
T  34994021 ttctcatttatgcactaagattgaaattccccttaatattttatataagaactgatttgtaataagatacaatttagttttagaatagtccaccagc 34994117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 4104183 - 4104302
Alignment:
Q  111 attaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttag 210  Q
    |||||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||| |||||||||    
T  4104183 attaaatcaaaattaaacataaattcccatttgtgcactaagattgaaattctccttaatattttgtatgaagattgatttgtaataaggcaaagtttag 4104282  T
Q  211 ttttagagtggtccaccagc 230  Q
    ||||||||||||||||||||    
T  4104283 ttttagagtggtccaccagc 4104302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 19631806 - 19632033
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||||||||||||||||||  ||  | | |||||||||| |||||||||||| |   |||||||| |||||||||| ||||||||||||||    
T  19631806 tcattgaacatttgtgtatttaatccatgtcacgttagattatatggtgtattgcacatttgcctataaggtgtttcattatatctttacttattgcaat 19631905  T
Q  101 tgtgt-tctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgag 199  Q
     |||| ||| ||||||||||||||| || ||| |||  ||||||||||||||||||||||||||||| ||||||||||  |||||   |||  |||| ||    
T  19631906 cgtgtctct-gattaaatcaaaattaaaaataaattctcatttgtgcactaagattgaaattcccctcaatattttgt--gaggatcaattaataataag 19632002  T
Q  200 gtaaagtttagttttagagtggtccaccagc 230  Q
    |||||  ||||||||||||||||||||||||    
T  19632003 gtaaaacttagttttagagtggtccaccagc 19632033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 67 - 228
Target Start/End: Complemental strand, 26301850 - 26301685
Alignment:
Q  67 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattcccct 166  Q
    |||| |||||||||||||| ||||||||||||||||||| |  ||||||||||||||| ||||||||||  |||||||| |||||||||||||||||| |    
T  26301850 taagatgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgtactaagattgaaattccctt 26301751  T
Q  167 ta---atattttgtatgaggactgatttgt-aatgaggtaaagtttagttttagagtggtccacca 228  Q
    ||   |||||||||||||| |||||||||| ||| || ||||  ||| ||||||||||| ||||||    
T  26301750 tatatatattttgtatgagaactgatttgtaaataagataaaacttaattttagagtggcccacca 26301685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 6613859 - 6613755
Alignment:
Q  126 aacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |||| ||||||||| |||||||||||||    
T  6613859 aacatagattcttatttgtgcactaagattgaaattctccttaatattttgtatgaggattcatttgtaataaggtgaagtttagtcttagagtggtcca 6613760  T
Q  226 ccagc 230  Q
    |||||    
T  6613759 ccagc 6613755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 4487882 - 4487823
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||| ||||||||||||||||||||||||| | ||||| |||||| ||| |||||||||    
T  4487882 ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtcca 4487823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 25441709 - 25441768
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    |||||||||||||||||||||||||||| || | ||||| |||||| ||| |||||||||    
T  25441709 ttaatattttgtatgaggactgatttgtgataaagtaaaatttagtgttacagtggtcca 25441768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 4488487 - 4488444
Alignment:
Q  87 ttacttattgcaattgtgttctagattaaatcaaaattcaacat 130  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||    
T  4488487 ttacttgttgcaattgtgttcttgattaaatcaaaattaaacat 4488444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 3148971 - 3148918
Alignment:
Q  172 ttttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    |||| |||||| ||||||||||||| ||| ||||||||  ||||||||||||||    
T  3148971 ttttctatgagaactgatttgtaataaggaaaagtttaaatttagagtggtcca 3148918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4102917 - 4102864
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattg 54  Q
    |||||||  |||||||||||||||| || ||| ||||||||||||||| |||||    
T  4102917 tcattgaacatttgtgtatttaatctatgccacatcatattatatggtgtattg 4102864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 4103034 - 4103070
Alignment:
Q  67 taaggtgtgtcattatatccttacttattgcaattgt 103  Q
    ||||||||||||||||||  |||||||||||||||||    
T  4103034 taaggtgtgtcattatatttttacttattgcaattgt 4103070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 24808 - 24582
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||| ||||||||||||||| |||  ||  ||| |||||||||| |||||| ||||| | | |||||| ||| |||||||  ||||||||| ||||    
T  24808 tcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcgcatttgcccataaggtatgttattatatatttacttattccaat 24709  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    ||||| |  ||||||||||||||  ||||||||||  |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||| |||    
T  24708 tgtgtccctgattaaatcaaaata-aacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtacgatgactgatttgtaataagg 24610  T
Q  201 taaagtttagttttagagtggtccacca 228  Q
    |||||||||||| ||||||| |||||||    
T  24609 taaagtttagttctagagtgatccacca 24582  T

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Target: scaffold0050 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5647 - 5871
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||| ||||||||||||||| |||  ||| | | |||||||||| |||||||||||| |   ||||||||||||||||||  || |||||||||||    
T  5647 tcattgagcatttgtgtatttaattcatgtcatgttagattatatggtgtattgcacatttgcctataaggtgtgtcattatatatttccttattgcaat 5746  T
Q  101 tgtgttctagattaaatcaaaattcaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaatgagg 200  Q
    | ||| |   |||||||||||||| ||||| ||||  ||||||| || |||||| ||||||  | ||||||||||||||||| |||||||| |||| |||    
T  5747 tatgtccctcattaaatcaaaattaaacatggattcgcatttgttcattaagatcgaaatt-tctttaatattttgtatgagaactgatttataataagg 5845  T
Q  201 taaagtttagttttagagtggtccac 226  Q
    ||||||||||||||||||||||||||    
T  5846 taaagtttagttttagagtggtccac 5871  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 65992 - 66052
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccac 226  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||| ||| ||||||||||    
T  65992 ttaatattttgtatgaggactaatttataataaggtaaagtttagtgttaaagtggtccac 66052  T

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Target: scaffold0312 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 9122 - 8993
Alignment:
Q  1 tcattgagtatttgtgtatttaatccataccatatcatattatatggtatattgcacattttctcttaaggtgtgtcattatatccttacttattgcaat 100  Q
    |||||||  |||||||||||||||  ||  ||| ||| ||||||  || |||||||||||| ||  || | |||  ||||||||| ||||| ||||||||    
T  9122 tcattgaacatttgtgtatttaatgtatgtcatgtcaaattatacagtttattgcacatttacttatacgatgttccattatatctttactaattgcaat 9023  T
Q  101 tgtgttctagattaaatcaaaattcaacat 130  Q
    ||||| || ||||||||||||||| |||||    
T  9022 tgtgtccttgattaaatcaaaattaaacat 8993  T

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Target: scaffold0312; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 8367 - 8308
Alignment:
Q  166 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtcca 225  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||||  ||||||||||||    
T  8367 ttaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagagtggtcca 8308  T

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Target: scaffold0262 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 12091 - 12034
Alignment:
Q  67 taaggtgtgtcattatatccttacttattgcaattgtgttctagattaaatcaaaatt 124  Q
    |||| |||||||||||||  |||||||||||||||||||||  |||||||||||||||    
T  12091 taagatgtgtcattatatatttacttattgcaattgtgttcctgattaaatcaaaatt 12034  T

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Target: scaffold0262; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 11495 - 11443
Alignment:
Q  170 tattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggt 222  Q
    ||||||||||||||||||||||||||| || |||| |||||| ||||||||||    
T  11495 tattttgtatgaggactgatttgtaataagataaaatttagtcttagagtggt 11443  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 107955 - 108011
Alignment:
Q  172 ttttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccacca 228  Q
    |||| ||||| |||||||||||||| ||| |||||||||  |||||||| |||||||    
T  107955 ttttctatgaagactgatttgtaataaggaaaagtttagacttagagtgatccacca 108011  T

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