View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11099_high_3 (Length: 454)
Name: NF11099_high_3
Description: NF11099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11099_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 47990512 - 47990932
Alignment:
| Q |
16 |
gaaattgaattggtacaaatgttgcaaaccctagtagttcccgcaaggtttcgcttcgcaaatcgaatatctctccgtcgaagcttgagcagaattcgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47990512 |
gaaattgaattggtacaaatgttgcaaaccctagtagttcccgcaaggtttcgcttcgcaaatcgaatatctctccgtcgaagcttgagcagaattcgtt |
47990611 |
T |
|
| Q |
116 |
cattcaattccgattatggagatcagtctcgtggtgggctccctcgattctactctgaaattcttcctccttcaaaggcatgcgctcttatctaatatct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47990612 |
cattcaattccgattatggagatcagtctcgtggtgggctccctcgattctactctgaaattcttcctccttcaaaggcatgcgctcttatctaatatct |
47990711 |
T |
|
| Q |
216 |
cacgaattttactattaatgttaggtttaccttcaatttgtgannnnnnnnccagttgataacgcccctccttgttcagtctactcattgagctgggttt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47990712 |
cacgaattttactattaatgttaggtttaccttcaatttgtgattttttt--cagttgataacgcccctccctgttcagtctactcattgagctgggttt |
47990809 |
T |
|
| Q |
316 |
tcgcaaaatttcttaattttaagggtttactaataattcatttaactttttcaaaaaactcttcattcagggtaatgttattcgtgttaaaggcgatgaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47990810 |
tcgcaaaatttcttaattttaagggtttactaataattcatttaactttttcaaaaaactcttcattcagggtaatgttattcgtgttaaaggcgatgaa |
47990909 |
T |
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| Q |
416 |
ttctggcacatgactaaagtatt |
438 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
47990910 |
ttctggcacatgactaaagtatt |
47990932 |
T |
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