View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11099_low_10 (Length: 276)

Name: NF11099_low_10
Description: NF11099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11099_low_10
NF11099_low_10
[»] chr3 (19 HSPs)
chr3 (18-271)||(54764454-54764707)
chr3 (19-271)||(54765065-54765315)
chr3 (18-255)||(54763883-54764091)
chr3 (150-258)||(54765679-54765787)
chr3 (23-123)||(54763524-54763623)
chr3 (167-255)||(49827711-49827799)
chr3 (90-255)||(54764100-54764264)
chr3 (82-252)||(1317326-1317491)
chr3 (90-255)||(54765352-54765517)
chr3 (194-255)||(21634373-21634434)
chr3 (90-154)||(54764817-54764881)
chr3 (173-255)||(1317749-1317831)
chr3 (194-255)||(4358434-4358495)
chr3 (194-255)||(21633510-21633571)
chr3 (194-255)||(26059670-26059731)
chr3 (194-255)||(26060543-26060604)
chr3 (190-254)||(36522826-36522890)
chr3 (191-255)||(49827452-49827516)
chr3 (23-75)||(54765811-54765863)
[»] chr2 (7 HSPs)
chr2 (18-271)||(1077432-1077686)
chr2 (18-255)||(1076833-1077069)
chr2 (150-271)||(1078016-1078136)
chr2 (23-123)||(1076474-1076573)
chr2 (90-255)||(1077078-1077242)
chr2 (23-75)||(1078160-1078212)
chr2 (175-255)||(1078226-1078306)
[»] chr5 (11 HSPs)
chr5 (23-255)||(27433826-27434058)
chr5 (77-252)||(27433312-27433487)
chr5 (82-255)||(27434072-27434246)
chr5 (23-109)||(27432956-27433041)
chr5 (77-223)||(13549868-13550012)
chr5 (23-109)||(13549388-13549473)
chr5 (194-255)||(34997747-34997808)
chr5 (81-145)||(43250962-43251026)
chr5 (77-123)||(17843195-17843241)
chr5 (194-255)||(20400299-20400360)
chr5 (194-255)||(34996874-34996935)
[»] chr6 (8 HSPs)
chr6 (23-256)||(30695938-30696171)
chr6 (52-255)||(5323873-5324076)
chr6 (174-255)||(5324716-5324797)
chr6 (82-220)||(30693276-30693414)
chr6 (194-255)||(5323081-5323142)
chr6 (167-255)||(5324120-5324208)
chr6 (168-255)||(30695837-30695924)
chr6 (86-230)||(5324495-5324638)
[»] chr4 (11 HSPs)
chr4 (82-255)||(54962359-54962531)
chr4 (77-255)||(54961014-54961192)
chr4 (77-154)||(577299-577376)
chr4 (194-255)||(37087213-37087274)
chr4 (77-123)||(36032758-36032804)
chr4 (194-255)||(18122330-18122391)
chr4 (194-255)||(36031993-36032054)
chr4 (194-255)||(36032865-36032926)
chr4 (194-255)||(37086340-37086401)
chr4 (171-252)||(54961816-54961897)
chr4 (82-211)||(54962600-54962729)
[»] scaffold0206 (4 HSPs)
scaffold0206 (77-255)||(10670-10848)
scaffold0206 (18-95)||(11275-11352)
scaffold0206 (187-255)||(10536-10604)
scaffold0206 (190-254)||(11201-11265)
[»] chr8 (2 HSPs)
chr8 (78-242)||(13643621-13643785)
chr8 (78-242)||(13744046-13744210)
[»] chr1 (11 HSPs)
chr1 (167-255)||(20201332-20201420)
chr1 (77-204)||(20202280-20202406)
chr1 (22-104)||(20201239-20201320)
chr1 (167-255)||(34187653-34187741)
chr1 (194-255)||(4291969-4292030)
chr1 (194-255)||(33209252-33209313)
chr1 (194-255)||(37398698-37398759)
chr1 (194-255)||(41777581-41777642)
chr1 (194-255)||(41778443-41778504)
chr1 (194-255)||(50988311-50988372)
chr1 (85-181)||(7716130-7716226)
[»] scaffold0517 (1 HSPs)
scaffold0517 (194-255)||(9327-9388)
[»] chr7 (2 HSPs)
chr7 (194-255)||(46364434-46364495)
chr7 (194-255)||(46365308-46365369)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 54764707 - 54764454
Alignment:
Q  18 cccttttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataatcatagaat 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  54764707 ccctcttctcccatgcatttgatatatttacgaaattttaaacaacgtccatttacccgcgtgtattttagttgatgagggttcaatataatcgtagaat 54764608  T
Q  118 taaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtga 217  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  54764607 taaagttatctaatattctaaaaagtataaacgttttcgtaagaacgactttttataaataacaacttctcccgtgtatcaaagttaatttagtcagtga 54764508  T
Q  218 caacttataccgtgcatttgagttacttttgaaattttgtcgatctctgcttct 271  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  54764507 caacttataccgtgcatttgagttacttttgaaattttgtcaatgtctgcttct 54764454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 54765315 - 54765065
Alignment:
Q  19 ccttttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataatcatagaatt 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||  |||||||    
T  54765315 ccttttctcccatgcattttatatatttacgaaattttaaacaacgtccatttatccccgtgcattttagttgatgagggttcaatataattgtagaatt 54765216  T
Q  119 aaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataacagcttctcccgtgtatc-aaagttaatttagtgagtga 217  Q
    ||||||| ||||||||||||||||||| |||||||||||||||| || |||||||||||||   ||||||||||||||| |||||||||||||| |||||    
T  54765215 aaagttaactgatattctaaaaagtataaacgttttcgtaagaatgactttttataaataa---cttctcccgtgtatcaaaagttaatttagtcagtga 54765119  T
Q  218 caacttataccgtgcatttgagttacttttgaaattttgtcgatctctgcttct 271  Q
    ||||||||||||||||||||||||||||||||||||||||| || | |||||||    
T  54765118 caacttataccgtgcatttgagttacttttgaaattttgtcaatgtgtgcttct 54765065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 54764091 - 54763883
Alignment:
Q  18 cccttttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataatcatagaat 117  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||            || ||||||| ||||||||||||||||||||  ||||||    
T  54764091 cccttttctcccatgcattttatatatttacgaaattttatacaacgtc------------tgcattttaggtgatgagggttcaatataattgtagaat 54764004  T
Q  118 taaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtga 217  Q
    ||||||||||||||||||||| |||||| |||||||||||||                 ||||| |||||| |||||||||||||||||||||| |||||    
T  54764003 taaagttatctgatattctaagaagtataaacgttttcgtaa-----------------taacaacttctcgcgtgtatcaaagttaatttagtcagtga 54763921  T
Q  218 caacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54763920 caacttataccgtgcatttgagttacttttgaaatttt 54763883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 54765787 - 54765679
Alignment:
Q  150 gttttcgtaagaacgaatttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttga 249  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||| ||||||||    
T  54765787 gttttcgtaagaacgactttttataaataacaacttctcccgtgtatcaaagttaatttagtcagtgacagcatataccgtgcatttaagtgacttttga 54765688  T
Q  250 aattttgtc 258  Q
    |||||||||    
T  54765687 aattttgtc 54765679  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 54763623 - 54763524
Alignment:
Q  23 ttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataatcatagaattaaag 122  Q
    ||||||| ||||||| ||||||||||||| ||||| |||| ||||  |||||  |||| ||||||||||||||||||||||||||||  |||||||||||    
T  54763623 ttctcccctgcattttatatatttacgaatttttagacaatgtccacttatct-cgtgcattttagttgatgagggttcaatataattgtagaattaaag 54763525  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 49827799 - 49827711
Alignment:
Q  167 tttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||||||| ||| |  ||||||| |||||||||||||| | ||| ||||||| |||||||||| |||||||| |||||||||    
T  49827799 tttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttacttctgaaatttt 49827711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 255
Target Start/End: Complemental strand, 54764264 - 54764100
Alignment:
Q  90 tgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataacagcttctcc 189  Q
    |||||||||||||||||||| | ||| ||||| | || |||||||||||| ||||| ||| ||||   |||||    |||| ||| || ||| ||| | |    
T  54764264 tgatgagggttcaatataattacagagttaaaatgatgtgatattctaaatagtataaacatttttc-aagaattgcttttaatatatgacatcttgttc 54764166  T
Q  190 cgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    |||||||||||||||||||||| |||| ||||||||   || ||||||||||| || |||||||||    
T  54764165 cgtgtatcaaagttaatttagttagtgtcaacttatcttgtacatttgagttaattatgaaatttt 54764100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 1317491 - 1317326
Alignment:
Q  82 attttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaattttt-ataaataac 180  Q
    |||||||||||||| |||||||||||||  |||||| |      | |||||||||||| ||||| ||| |||| | |||||| | ||||| |||||||||    
T  1317491 attttagttgatgaaggttcaatataattgtagaatga------tgtgatattctaaatagtataaacatttttgaaagaacaattttttgataaataac 1317398  T
Q  181 agcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaat 252  Q
    | ||| | ||||||||  |||||  |||||  || |||||||||| | ||| ||||||||||||||||||||    
T  1317397 aacttataccgtgtatataagttggtttagacagcgacaacttatccagtgtatttgagttacttttgaaat 1317326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 255
Target Start/End: Complemental strand, 54765517 - 54765352
Alignment:
Q  90 tgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataacagcttctcc 189  Q
    |||||||||| ||||||||| ||||| ||||| | || |||||||||||| ||||| ||| ||||   |||||    |||| ||| || ||| ||| |      
T  54765517 tgatgagggtgcaatataattatagagttaaaatgatgtgatattctaaatagtataaacattttatcaagaattgcttttaatatatgacaacttgttt 54765418  T
Q  190 cgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    |||||||||||| ||||||||| |||| ||||||||   || ||||||||||| || |||||||||    
T  54765417 cgtgtatcaaagctaatttagtcagtgtcaacttatctagtacatttgagttagttatgaaatttt 54765352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 21634434 - 21634373
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| ||||||||||| |  |||||||||  |||||||||||||||||    
T  21634434 tatcaaagttagtttagttagtgacaacttgtctcgtgcatttatgttacttttgaaatttt 21634373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 54764881 - 54764817
Alignment:
Q  90 tgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgtttt 154  Q
    |||||||||||||||||||| ||||| ||||| | || |||||||||||| ||||| ||| ||||    
T  54764881 tgatgagggttcaatataattatagagttaaaatgatgtgatattctaaatagtataaacatttt 54764817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 1317831 - 1317749
Alignment:
Q  173 taaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||| ||| ||| ||| ||||||| ||| || |||| | | ||||||||||| |||||||||||||||| || |||||||||    
T  1317831 taaatgacaacttgtcctgtgtatcgaagatagtttaatcaatgacaacttatcccgtgcatttgagttagttctgaaatttt 1317749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 4358495 - 4358434
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  4358495 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaatttt 4358434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 21633571 - 21633510
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  21633571 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaatttt 21633510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 26059670 - 26059731
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  26059670 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaatttt 26059731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 26060543 - 26060604
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  26060543 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaatttt 26060604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 36522826 - 36522890
Alignment:
Q  190 cgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaattt 254  Q
    ||||||||||| ||| |||||| |||||||||||||  | | ||||||||||| || ||||||||    
T  36522826 cgtgtatcaaacttagtttagtaagtgacaacttatcacatacatttgagttagttatgaaattt 36522890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 49827516 - 49827452
Alignment:
Q  191 gtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    |||||||||||||| |||||| |||| ||||||||  ||||||||| ||||| || | |||||||    
T  49827516 gtgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaatttt 49827452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 54765863 - 54765811
Alignment:
Q  23 ttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatcc 75  Q
    ||||||||||||||| || ||||||||| |||||| ||||| ||| |||||||    
T  54765863 ttctcccatgcattttatttatttacgatattttagacaacatccatttatcc 54765811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 1077686 - 1077432
Alignment:
Q  18 cccttttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataatcatagaat 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1077686 cccttttctcccatgcatttgatatatttatgaaattttaaacaacgtccatttatccgcgtgtattttagttgatgagggttcaatataatcgtagaat 1077587  T
Q  118 taaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataacagcttctcccgtgtatc-aaagttaatttagtgagtg 216  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||    
T  1077586 taaagttatctgatattcaaaaaagtataaacgttttcgtaagaacgaatttttataaataacaacttctcccatgtatcaaaagttaatttagtcagtg 1077487  T
Q  217 acaacttataccgtgcatttgagttacttttgaaattttgtcgatctctgcttct 271  Q
    ||||||||||||||||||||||||||||||| |||||||||| || | |||||||    
T  1077486 acaacttataccgtgcatttgagttacttttaaaattttgtcaatgtttgcttct 1077432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 1077069 - 1076833
Alignment:
Q  18 cccttttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataatcatagaat 117  Q
    ||||| |||||||||||||| ||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||||||||||||||||||  || |||    
T  1077069 cccttctctcccatgcattt-atatatttacgaaattttatacaacgtctatttatccccgtgtattttagttgatgagggttcaatataattgtataat 1076971  T
Q  118 taaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtga 217  Q
    ||||||||| |||||||||||||||||| ||||||||||||| ||| | |||||  |||||||| ||||||  ||||||||||||||||||||| |||||    
T  1076970 taaagttatatgatattctaaaaagtataaacgttttcgtaataacaacttttttaaaataacaacttctcgtgtgtatcaaagttaatttagtcagtga 1076871  T
Q  218 caacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1076870 caacttataccgtgcatttgagttacttttgaaatttt 1076833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 1078136 - 1078016
Alignment:
Q  150 gttttcgtaagaacgaatttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttga 249  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| | |||||||||||||| ||| ||||||||    
T  1078136 gttttcgtaagaacgactttttataaataacaacttctcc-gtgtatcaaagttaatttagtcagtgacagcatataccgtgcatttaagtgacttttga 1078038  T
Q  250 aattttgtcgatctctgcttct 271  Q
    ||||||||| || |||||||||    
T  1078037 aattttgtcaatgtctgcttct 1078016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 1076573 - 1076474
Alignment:
Q  23 ttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataatcatagaattaaag 122  Q
    ||||||| ||||||| ||||||||||||| ||||| ||||||||| ||||||  |||| ||||||||||||||||||||||||||||  |||||||||||    
T  1076573 ttctcccctgcattttatatatttacgaatttttagacaacgtccatttatct-cgtgcattttagttgatgagggttcaatataattgtagaattaaag 1076475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 255
Target Start/End: Complemental strand, 1077242 - 1077078
Alignment:
Q  90 tgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataacagcttctcc 189  Q
    |||||||||||||||||||| | ||| ||||| | || |||||||||||| ||||| ||| ||||   |||||    |||| ||| || ||||||| | |    
T  1077242 tgatgagggttcaatataattacagagttaaaatgatgtgatattctaaatagtataaacatttt-tcaagaattgcttttaatatatgacagcttgttc 1077144  T
Q  190 cgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    |||||||||||||||||||| | |||| | ||||||    | ||||||||||| || |||||||||    
T  1077143 cgtgtatcaaagttaatttaatcagtgtctacttatcttatacatttgagttaattatgaaatttt 1077078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 1078212 - 1078160
Alignment:
Q  23 ttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatcc 75  Q
    ||||||||||||||| || ||||||||| |||||||||||| ||| |||||||    
T  1078212 ttctcccatgcattttatttatttacgatattttaaacaacatccatttatcc 1078160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 1078306 - 1078226
Alignment:
Q  175 aataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||| |||| | ||||||||| ||||| |||| | | |||||| |||| || |||||||||||||||| |||||||||    
T  1078306 aataacaacttcactcgtgtatcatagttagtttaatcaatgacaatttatcccatgcatttgagttacttctgaaatttt 1078226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 27434058 - 27433826
Alignment:
Q  23 ttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataatcatagaattaaag 122  Q
    ||||||||||||||| || ||||||| | |||||| |||| || | |||| |||  || ||||||||||||||| ||| |||||||| ||||||||||||    
T  27434058 ttctcccatgcattttatttatttacaatattttagacaatgtacatttacccg--tgcattttagttgatgagagtttaatataattatagaattaaag 27433961  T
Q  123 ttatctgatattctaaaaagtattaacgttttcgtaagaacgaattttt--ataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaa 220  Q
    | || |||||||||||| | ||| |||||||||| || ||| | |||||  ||||||||||  || |||| | ||||||||||| |||||| ||||||||    
T  27433960 tgatgtgatattctaaatattataaacgttttcgcaataacaatttttttgataaataacaatttgtcccttatatcaaagttagtttagttagtgacaa 27433861  T
Q  221 cttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||| |||| ||||||||||||||||||||||||    
T  27433860 cttatcccgtccatttgagttacttttgaaatttt 27433826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 77 - 252
Target Start/End: Complemental strand, 27433487 - 27433312
Alignment:
Q  77 cgtgtattttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaa 176  Q
    |||| ||||||||||||||| ||| || ||  |  |||||||||||| ||  |||| |||||| ||||| ||  |||| | |||||| | ||||||||||    
T  27433487 cgtgcattttagttgatgagagtttaacattcttgtagaattaaagtgatgcgataatctaaatagtataaattttttagcaagaacaattttttataaa 27433388  T
Q  177 taacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaat 252  Q
    |||||  || |||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||    
T  27433387 taacaatttgtcccatgtatcaaagttaatttagttagtgataacttatcccgtgcatttgagttacttctgaaat 27433312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 255
Target Start/End: Complemental strand, 27434246 - 27434072
Alignment:
Q  82 attttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaat-ttttataaataac 180  Q
    ||||||| ||||||| ||||||||| || |||||| |||||| || | |||||||||| ||||| ||| ||||   |||||| | | |||| ||||||||    
T  27434246 attttagatgatgagagttcaatattattatagaactaaagtgatgtaatattctaaatagtataaacattttaccaagaacaattattttttaaataac 27434147  T
Q  181 agcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    | |||||||||| ||||  ||||| |||||| | ||||||| |||   ||||||||||||||||| |||||||||    
T  27434146 aacttctcccgtatatcgtagttagtttagtcaatgacaacctatcatgtgcatttgagttacttatgaaatttt 27434072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 27433041 - 27432956
Alignment:
Q  23 ttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataat 109  Q
    ||||||||| ||||| ||||||||||||||||||| |||| ||||  |||||| |||| ||||||||||||| ||||||||||||||    
T  27433041 ttctcccatacattttatatatttacgaaattttagacaatgtccacttatcc-cgtgcattttagttgatgggggttcaatataat 27432956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 13550012 - 13549868
Alignment:
Q  77 cgtgtattttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaa 176  Q
    |||| ||||||||| ||||||||||||||| ||  ||||||| |||  |||| |||||||||| |||||||||| |||   ||||||  | |||||||||    
T  13550012 cgtgcattttagtttatgagggttcaatatcattttagaattgaagagatctaatattctaaatagtattaacgctttatcaagaac--aattttataaa 13549915  T
Q  177 taacagcttctcccgtgtatcaaagttaatttagtgagtgacaactt 223  Q
    | ||| ||| || || |||||||||||| |||||   ||||||||||    
T  13549914 tgacaacttgtctcgcgtatcaaagttagtttagccggtgacaactt 13549868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 13549473 - 13549388
Alignment:
Q  23 ttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataat 109  Q
    ||||| ||||||||| || ||||||||| ||| || |||| |||| ||||||| | || |||||||||||| |||||||||||||||    
T  13549473 ttctctcatgcattttatttatttacgatattatagacaatgtccatttatcc-catgcattttagttgattagggttcaatataat 13549388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 34997808 - 34997747
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || ||||||||||  |||||||||  |||||||||||||||||    
T  34997808 tatcaaagttagtttagttagcgacaacttatctcgtgcatttatgttacttttgaaatttt 34997747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 43251026 - 43250962
Alignment:
Q  81 tattttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtat 145  Q
    ||||||||||||||||| |||||||| ||  |||||||||||| |  |||||||||||| |||||    
T  43251026 tattttagttgatgaggattcaatattattgtagaattaaagtgagatgatattctaaatagtat 43250962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 17843241 - 17843195
Alignment:
Q  77 cgtgtattttagttgatgagggttcaatataatcatagaattaaagt 123  Q
    |||||||||||||| ||||||||||||||| || |||||||| ||||    
T  17843241 cgtgtattttagtttatgagggttcaatatcattatagaattgaagt 17843195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 20400299 - 20400360
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  20400299 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaatttt 20400360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 34996935 - 34996874
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  34996935 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaatttt 34996874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 30695938 - 30696171
Alignment:
Q  23 ttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataatcatagaattaaag 122  Q
    ||||| ||||||||| || ||||||||| ||| || |||| |||| ||||||| |||| ||||| |||||| ||||||||||||||| ||||| ||||||    
T  30695938 ttctctcatgcattttatttatttacgatattatagacaatgtccatttatcc-cgtgcattttggttgattagggttcaatataattatagagttaaag 30696036  T
Q  123 ttatctgatattctaaaaagtattaacgttttcgtaagaacga-atttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaac 221  Q
    | || |||| ||||||| ||||| |||||||| | |||||| | |||||||| ||||||| ||| ||||| |||||||| |||||||||| | |||||||    
T  30696037 tgatgtgattttctaaatagtataaacgtttttgcaagaacaatatttttattaataacaacttgtcccgcgtatcaaatttaatttagtcaatgacaac 30696136  T
Q  222 ttataccgtgcatttgagttacttttgaaattttg 256  Q
    |||| ||||||||||| |||| |||| || |||||    
T  30696137 ttatcccgtgcatttgtgttattttttaatttttg 30696171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 255
Target Start/End: Complemental strand, 5324076 - 5323873
Alignment:
Q  52 attttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgt 151  Q
    |||||| |||| || | ||||||| |||| ||||||||| ||||| |||||||||||| ||||||||||||| || |||| ||||| | ||||| |||||    
T  5324076 attttagacaatgttcatttatcc-cgtgcattttagttaatgagagttcaatataattatagaattaaagtgatgtgatgttctagatagtataaacgt 5323978  T
Q  152 tttcgtaagaacgaatt-tttataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaa 250  Q
    ||||| |||||| | || ||| ||||||||||||| || ||||||||||||||| ||||||   |||||||||||  |||||||||||||||||||||||    
T  5323977 tttcgaaagaacaatttctttttaaataacagcttgtctcgtgtatcaaagttagtttagttgatgacaacttatttcgtgcatttgagttacttttgaa 5323878  T
Q  251 atttt 255  Q
     ||||    
T  5323877 ttttt 5323873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 5324797 - 5324716
Alignment:
Q  174 aaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    |||||||| |||||| ||||||||||||||| ||||||   ||||||| ||| |||||||||||||||||||||||| ||||    
T  5324797 aaataacaacttctctcgtgtatcaaagttagtttagtcgatgacaacatattccgtgcatttgagttacttttgaattttt 5324716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 220
Target Start/End: Original strand, 30693276 - 30693414
Alignment:
Q  82 attttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataaca 181  Q
    ||||||||| ||||||||||||||  ||  ||||||| |||  || |||||||||||| ||||| |||| |||   |||||| | ||||||||||| | |    
T  30693276 attttagtttatgagggttcaataccattttagaattgaagcgatgtgatattctaaatagtataaacgctttatcaagaacaattttttataaatgaga 30693375  T
Q  182 gcttctcccgtgtatcaaagttaatttagtgagtgacaa 220  Q
      || ||||| |||||||||||| |||||  ||||||||    
T  30693376 atttgtcccgcgtatcaaagttagtttagccagtgacaa 30693414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 5323142 - 5323081
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    |||||||||||||||||| | |||| |||||| |||||||||| ||||| ||||||| ||||    
T  5323142 tatcaaagttaatttagttattgactacttatcccgtgcatttaagttaattttgaactttt 5323081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 5324208 - 5324120
Alignment:
Q  167 tttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| || | || |||||| ||||||||||| || ||| |||| |||| ||| ||||||||||| |||| ||| ||||||||    
T  5324208 tttttataaatgacggtttgtcccgtatatcaaagttagttgagttagtggcaacgtatcccgtgcatttgtgttaatttcgaaatttt 5324120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 30695837 - 30695924
Alignment:
Q  168 ttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    |||||||||| |||| || |||||| ||||| ||||| |||||| ||||||||||||| || | ||||||| ||  ||| ||||||||    
T  30695837 ttttataaattacagtttgtcccgtatatcagagttagtttagttagtgacaacttatcccatccatttgaattgatttagaaatttt 30695924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 230
Target Start/End: Complemental strand, 5324638 - 5324495
Alignment:
Q  86 tagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataacagctt 185  Q
    |||||||||||| |||||||| ||  || |||| |||| |  ||||| |||||| ||||| |||| |||   | |||| ||||||  ||||| ||| |||    
T  5324638 tagttgatgaggattcaatatcattttaaaattgaagtgagatgatactctaaatagtataaacgctttatcacgaacaaattttg-taaatgacaactt 5324540  T
Q  186 ctcccgtgtatcaaagttaatttagtgagtgacaacttataccgt 230  Q
     ||||||||||| || ||| |||||| ||||||||||||| ||||    
T  5324539 atcccgtgtatcgaaattagtttagttagtgacaacttatcccgt 5324495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 255
Target Start/End: Complemental strand, 54962531 - 54962359
Alignment:
Q  82 attttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataaca 181  Q
    ||||||||||||||||||||||||||||  |||||||||  | || ||||||| |||| ||||| ||||||||||||||||| | |||||| |||||| |    
T  54962531 attttagttgatgagggttcaatataattgtagaattaagatgatgtgatattttaaatagtataaacgttttcgtaagaacaattttttaaaaataaaa 54962432  T
Q  182 gcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
     |||| ||||||||||  ||||| ||||||   ||| |||||||  ||| ||||||||||||||||||||||||    
T  54962431 acttc-cccgtgtatcttagttagtttagtccatgaaaacttatctcgtacatttgagttacttttgaaatttt 54962359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 255
Target Start/End: Complemental strand, 54961192 - 54961014
Alignment:
Q  77 cgtgtattttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaattttt-ataa 175  Q
    |||| |||||| |||||||| ||||||||| ||  |||||||||||| ||  |||||| |||| | ||| ||| |||| | |||||| | ||||| ||||    
T  54961192 cgtgcattttatttgatgagagttcaatattattgtagaattaaagtgatgcgatattataaataatataaacttttttgcaagaacaatttttttataa 54961093  T
Q  176 ataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    |||| | ||| || | || |||||||||| ||| || |||||||||||||  |||||||||||||||||| |||||||||    
T  54961092 ataaaaacttgtcacatgcatcaaagttagttt-gtcagtgacaacttatctcgtgcatttgagttacttctgaaatttt 54961014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 577376 - 577299
Alignment:
Q  77 cgtgtattttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgtttt 154  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||| || ||||||| |||| ||||| ||||||||    
T  577376 cgtgcattttagttgatgagggttcaatataattatagagttaaagtgatgtgatattataaatagtataaacgtttt 577299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 37087274 - 37087213
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || ||||||||||  |||||||||  |||||||||||||||||    
T  37087274 tatcaaagttagtttagttagcgacaacttatctcgtgcatttatgttacttttgaaatttt 37087213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 36032758 - 36032804
Alignment:
Q  77 cgtgtattttagttgatgagggttcaatataatcatagaattaaagt 123  Q
    |||| ||||||||| ||||||||||||||| || |||||||||||||    
T  36032758 cgtgcattttagtttatgagggttcaatatcattatagaattaaagt 36032804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 18122391 - 18122330
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  18122391 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaatttt 18122330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 36031993 - 36032054
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  36031993 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaatttt 36032054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 36032865 - 36032926
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  36032865 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaatttt 36032926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 37086401 - 37086340
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  37086401 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaatttt 37086340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 54961897 - 54961816
Alignment:
Q  171 tataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaat 252  Q
    ||||||| |||| || |||||| || |||||||| |||||| || ||||| |||| || ||||||||||||| |||| ||||    
T  54961897 tataaattacagtttgtcccgtataccaaagttagtttagttagcgacaatttattccatgcatttgagttaattttaaaat 54961816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 211
Target Start/End: Complemental strand, 54962729 - 54962600
Alignment:
Q  82 attttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataaca 181  Q
    |||||||||||||| |  ||||| | ||  ||||||| |||| |  |||||||||| | ||||  ||||||||  ||||||  | |||| |||||| |||    
T  54962729 attttagttgatgacgaatcaatgtcattgtagaattgaagtgaggtgatattctacatagtacaaacgttttattaagaattatttttaataaatgaca 54962630  T
Q  182 gcttctcccgtgtatcaaagttaatttagt 211  Q
     | | |||||||||||||||||||||||||    
T  54962629 acatgtcccgtgtatcaaagttaatttagt 54962600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 255
Target Start/End: Original strand, 10670 - 10848
Alignment:
Q  77 cgtgtattttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaa 176  Q
    |||||||||||||||||||  ||||||||| ||  ||||||| |||  |  |||||||||| | ||||| ||| ||||   | || | ||||||||||||    
T  10670 cgtgtattttagttgatgacagttcaatatcattgtagaattgaagcgaagtgatattctagatagtataaacattttatcaggagcaaatttttataaa 10769  T
Q  177 taacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||| ||| |  |  |||||||||||||||||||  |||| ||||||| |||||||||||||| |||| ||| |||||    
T  10770 taacaacttgtttcaggtatcaaagttaatttagtcggtgataacttatcccgtgcatttgagtaacttatgatatttt 10848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 11275 - 11352
Alignment:
Q  18 cccttttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatga 95  Q
    |||||||||||||||||||| ||||||||| |||||||||||||  |||| ||||||| | |  ||||||||||||||    
T  11275 cccttttctcccatgcattttatatatttatgaaattttaaacattgtccatttatccccttacattttagttgatga 11352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 10536 - 10604
Alignment:
Q  187 tcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||||||||||||||||| | || ||||||||   || ||||||||||||||||||||||||    
T  10536 tcccgtgtatcaaagttaatttagtcaatgtcaacttatcttgtacatttgagttacttttgaaatttt 10604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 11201 - 11265
Alignment:
Q  190 cgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaattt 254  Q
    |||||||||||||||||||||| |||  ||||||||   || ||||||||||| || ||||||||    
T  11201 cgtgtatcaaagttaatttagtcagtatcaacttatcttgtacatttgagttaattatgaaattt 11265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 13643785 - 13643621
Alignment:
Q  78 gtgtattttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaat 177  Q
    ||||||||||||||||||  ||||||||| ||  ||||| |||||| |  |||||||||||| ||||  |||||||| | | |||| |  |||||||||     
T  13643785 gtgtattttagttgatgatcgttcaatattattgtagaaataaagtgaggtgatattctaaatagtaaaaacgttttagcaggaactatattttataaaa 13643686  T
Q  178 aacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagtta 242  Q
    | ||| || || ||||||| ||||||| |||| | | |||||| ||||||  |||||||||||||    
T  13643685 atcagtttatcgcgtgtattaaagttagtttaattaatgacaatttatacaatgcatttgagtta 13643621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 13744210 - 13744046
Alignment:
Q  78 gtgtattttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaat 177  Q
    ||||||||||||||||||  ||||||||| ||  ||||| |||||| |  |||||||||||| ||||  |||||||| | | |||| |  |||||||||     
T  13744210 gtgtattttagttgatgatcgttcaatattattgtagaaataaagtgaggtgatattctaaatagtaaaaacgttttagcaggaactatattttataaaa 13744111  T
Q  178 aacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagtta 242  Q
    | ||| || || ||||||| ||||||| |||| | | |||||| ||||||  |||||||||||||    
T  13744110 atcagtttatcgcgtgtattaaagttagtttaattaatgacaatttatacaatgcatttgagtta 13744046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 20201420 - 20201332
Alignment:
Q  167 tttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| ||| ||| || ||||||||||| ||| |  ||| | ||||||||||| || ||||||||||||||||||||| ||||    
T  20201420 tttttataaatgacaacttgtctcgtgtatcaaacttagtccagtcaatgacaacttatcccatgcatttgagttacttttgaattttt 20201332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 20202406 - 20202280
Alignment:
Q  77 cgtgtattttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaa 176  Q
    |||||||||||||| ||||||||||||||| ||  ||||||| ||   || |||||||||| | ||| | ||||||||   |||||| ||||||||| ||    
T  20202406 cgtgtattttagtttatgagggttcaatatcattctagaattgaatcaatgtgatattctagatagtgtaaacgttttatcaagaac-aatttttattaa 20202308  T
Q  177 taacagcttctcccgtgtatcaaagtta 204  Q
    | ||| ||| | ||||||||||||||||    
T  20202307 tgacaacttgttccgtgtatcaaagtta 20202280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 20201320 - 20201239
Alignment:
Q  22 tttctcccatgcatttgatatatttacgaaattttaaacaacgtccgtttatccgcgtgtattttagttgatgagggttcaat 104  Q
    |||||||||||||||| |  ||||||| |||||||| |||| |||| ||||| | |||| ||||||||||||||| |||||||    
T  20201320 tttctcccatgcattttagttatttacaaaattttagacaatgtccatttattc-cgtgcattttagttgatgagagttcaat 20201239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 34187741 - 34187653
Alignment:
Q  167 tttttataaataacagcttctcccgtgtatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||| ||| ||| |||  ||||||||||||||||| |||| | ||||||||||||| ||||  | || ||||| ||||||||||||    
T  34187741 tttttatcaatgacatcttgccccgtgtatcaaagttagtttaataagtgacaacttatcccgtatactttagttagttttgaaatttt 34187653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 4291969 - 4292030
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  4291969 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaatttt 4292030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 33209313 - 33209252
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  33209313 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaatttt 33209252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 37398759 - 37398698
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  37398759 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaatttt 37398698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 41777642 - 41777581
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| |  |||||||| | ||||||||||  |||||||||||||||||    
T  41777642 tatcaaagttagtttagttaacgacaacttgtcccgtgcatttatgttacttttgaaatttt 41777581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 41778504 - 41778443
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  41778504 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaatttt 41778443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 50988372 - 50988311
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  50988372 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaatttt 50988311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 7716130 - 7716226
Alignment:
Q  85 ttagttgatgagggttcaatataatcatagaattaaagttatctgatattctaaaaagtattaacgttttcgtaagaacgaatttttataaataaca 181  Q
    |||||| ||||||||||||||| || ||||| || |||| || ||||||| |||| || || |||||||| | |||| |  | ||||||||||||||    
T  7716130 ttagtttatgagggttcaatatcattatagatttgaagtgatgtgatattataaatagcatgaacgttttagcaagaccagacttttataaataaca 7716226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 9327 - 9388
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||| |||||  |||||||||  |||||||||||||||||    
T  9327 tatcaaagttagtttagttagcgacagcttatctcgtgcatttatgttacttttgaaatttt 9388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 46364434 - 46364495
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  46364434 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaatttt 46364495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 46365308 - 46365369
Alignment:
Q  194 tatcaaagttaatttagtgagtgacaacttataccgtgcatttgagttacttttgaaatttt 255  Q
    ||||||||||| |||||| || |||||||| |  |||||||||  |||||||||||||||||    
T  46365308 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaatttt 46365369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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