View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11099_low_15 (Length: 253)
Name: NF11099_low_15
Description: NF11099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11099_low_15 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 27472629 - 27472394
Alignment:
| Q |
18 |
gtatgcacggtctatcaagcgagtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctc |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27472629 |
gtatgcacggtctatcaagcgagtgcgtgttttcggggtagtccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctc |
27472530 |
T |
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| Q |
118 |
tgcacatgttacattctttgaaaatacttgtgacgccagctacatctgattctgcaaaagatgttagtactcatgtgctacctattcctatatttgaaac |
217 |
Q |
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|||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27472529 |
tgcacatgttactttctttgaggatacttgtgacaccagctacatatgattctgcaaaagatgttagtactcatgtgctacctattcctttatttgaaac |
27472430 |
T |
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| Q |
218 |
acttgtgtgtactcacagacctccacggtcacatag |
253 |
Q |
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|||||| |||||||||| ||||||| |||||||||| |
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| T |
27472429 |
acttgtctgtactcacatacctccatggtcacatag |
27472394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 40 - 253
Target Start/End: Complemental strand, 27465529 - 27465316
Alignment:
| Q |
40 |
gtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttacattctttgaa |
139 |
Q |
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||||||| || ||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
27465529 |
gtgtgtgcttccggggtagttcagagtttaaagggggtatcaatgttattgtccatctacacatccattttatatctctgcaaatgttacattctttgaa |
27465430 |
T |
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| Q |
140 |
aatacttgtgacgccagctacatctgattctgcaaaagatgttagtactcatgtgctacctattcctatatttgaaacacttgtgtgtactcacagacct |
239 |
Q |
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| T |
27465429 |
aatacttgtgacaccagctacatctgattctgcaaaagatgatagtactcatgtgctacctattcctatatttgaaacacttgtctgtactcacagacct |
27465330 |
T |
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| Q |
240 |
ccacggtcacatag |
253 |
Q |
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|||||||||||||| |
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| T |
27465329 |
ccacggtcacatag |
27465316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 37918746 - 37918647
Alignment:
| Q |
39 |
agtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttacattctttga |
138 |
Q |
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|||| ||||||| |||||| |||| |||||||| ||||||| ||||||| |||||||||||||| ||||||| |||||||| ||||||| |||||||| |
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| T |
37918746 |
agtgcgtgtttttggggtactccaaagttcaaaaagggtatcggtgttattgtccatctacacatcgtttttatgtctctgcagatgttactttctttga |
37918647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 33833033 - 33833138
Alignment:
| Q |
39 |
agtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttacattctttga |
138 |
Q |
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|||| ||||||| |||||| |||| |||||| | ||| ||| ||||||| |||||||||||||| ||||||| |||||||| ||||||| ||| |||| |
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| T |
33833033 |
agtgcgtgtttttggggtactccaaagttcataaagggcatcggtgttattgtccatctacacatcgtttttatgtctctgcagatgttactttccttga |
33833132 |
T |
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| Q |
139 |
aaatac |
144 |
Q |
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||||| |
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| T |
33833133 |
gaatac |
33833138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 27517903 - 27518002
Alignment:
| Q |
39 |
agtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttacattctttga |
138 |
Q |
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||||||||||| |||||| | ||||||||||| |||| |||||||||||| || || ||||| || ||||||| | || || ||||||| |||||||| |
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| T |
27517903 |
agtgtgtgtttcaggggtactgcagagttcaaaagggggatcaatgttattgtctatttacacgtcatttttatgtttcgacagatgttactttctttga |
27518002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 37075269 - 37075339
Alignment:
| Q |
68 |
caaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttacattctttga |
138 |
Q |
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|||| |||||||| ||||||||||||||| |||||| ||||||| | || ||| ||||||| |||||||| |
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| T |
37075269 |
caaaaggggtatcgttgttattttccatctgcacatcgtttttatgtttcagcatatgttactttctttga |
37075339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 36999089 - 36999188
Alignment:
| Q |
39 |
agtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttacattctttga |
138 |
Q |
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|||||||||||| |||||| ||||||||||||| ||||| | ||||||| |||||||||||||| ||||||| | | |||| ||||||| |||||||| |
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| T |
36999089 |
agtgtgtgttttgggggtactccagagttcaaaaagggtaccggtgttattgtccatctacacatcgtttttatgtttatgcagatgttactttctttga |
36999188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 35200651 - 35200736
Alignment:
| Q |
53 |
gggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttacattctttga |
138 |
Q |
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|||||||| |||||||||| ||| ||| || |||| |||||||||||||| ||||||| |||| ||| ||||||| |||||||| |
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| T |
35200651 |
gggtattctagagttcaaatgggatattgatcttatgctccatctacacatcgtttttatgtctcagcaaatgttactttctttga |
35200736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 6998988 - 6999058
Alignment:
| Q |
68 |
caaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttacattctttga |
138 |
Q |
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|||| ||| |||| |||||||| |||||||||||||| |||||||| || ||| ||||||| |||||||| |
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| T |
6998988 |
caaaagggttatcgatgttattctccatctacacatcgcttttatatttcagcagatgttactttctttga |
6999058 |
T |
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