View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11099_low_2 (Length: 475)
Name: NF11099_low_2
Description: NF11099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11099_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 17501637 - 17502088
Alignment:
| Q |
19 |
ggtaatgtcacaccctttatatgaaaccacatgaggattcggataacatagagaagatagaattttctcctctctttgtagaggctctgatctcgatagc |
118 |
Q |
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| T |
17501637 |
ggtaatgtcacaccctttatatgaaaccacatgaggattcggataacatagagaagatagaattttctcctctctttgtagaggctctgatctcgatagc |
17501736 |
T |
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| Q |
119 |
tcggatgacttgacggcgaagatttcgccgctaacggtggctaggctgacggttgatgttgagccatggcctatagcgtggcctctgttccacttcatat |
218 |
Q |
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| T |
17501737 |
tcggatgacttgacggcaaagatttcgccgctaacggtggctaggctgacggttgatgttgagccatggcctatagcgtggcctctgttccacttcatat |
17501836 |
T |
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| Q |
219 |
ttaaaatgaggaaacaaactttatgttattgaatgttgagtttgagttggttattgtagcctttttatacatgtaatattttttggtgttagttaggtga |
318 |
Q |
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| T |
17501837 |
ttaaaatgaggaa-caaactttatgttattgaatgttgagtttgagttggttattgtagcctttttatacatgtaatattttttggtgttagttaggtga |
17501935 |
T |
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| Q |
319 |
tatttttatacgtgtatttgatgagaaattgaatgatggagacaaaattgagtttgatgaggctttgaaggatggttttatgaaaagtgtcctttttatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17501936 |
tatttttatacgtgtatttgatgagaaattgaatgatggagacaaaattgagtttgatgaggctttgaaggatggttttatgaaaagtgtcctttttatt |
17502035 |
T |
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| Q |
419 |
gggttggctacttaatttggttggcgttcactctctatctattcttctctctc |
471 |
Q |
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| T |
17502036 |
gggttggctacttaatttggttggcgttcactctctatctattcttctctctc |
17502088 |
T |
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