View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11099_low_4 (Length: 429)
Name: NF11099_low_4
Description: NF11099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11099_low_4 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 24281407 - 24281816
Alignment:
| Q |
13 |
cacttccatcatctgaggtcattacacctgatccaaagattgtaacatctatctctgagcaaggtttcataggaagaagttccaaggaaatcaatctaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24281407 |
cacttccatcatctgaggtcattacacctgatccaaagattgtaacatctatctctgagcaaggtttcataggaagaagttccaaggaaatcaatctaga |
24281506 |
T |
|
| Q |
113 |
atcagagttgtataaagcccagttatgcagcatgcttctaggaagatcttcagtgtcatacacatcatagtcgttatcaaaaacgataaattcatctgtt |
212 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24281507 |
atcagagttgtataaagcccaattatgcagcatgcttctaggaagatcttcagtgtcatacacatcatagtcgttatcaaaaacaataaattcatctgtt |
24281606 |
T |
|
| Q |
213 |
tcttgaagagaagttttataataagcagggagagggtaatcatttgctatctcatcttcattgattttgatatagaatttgttagatgacgaggatgatc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24281607 |
tcttgaagagaagttttataataagcagggagagggtaatcatttgctatctcatcttcattgattttgatatagaatttgttagatgacgaggatgatc |
24281706 |
T |
|
| Q |
313 |
taggatttttcctctgcttctttgatttccagtactcttcttcctgcaacagtcttgctagctttgcatcttcatcttcttcatctacagccatctgatc |
412 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24281707 |
tagggtttttcctctgcttctttgatttccagtactcttcttcctgcaacagtcttgctagctttgcatcttcatcttcttcatctacagccatctgatc |
24281806 |
T |
|
| Q |
413 |
cttcttctct |
422 |
Q |
| |
|
|||||||||| |
|
|
| T |
24281807 |
cttcttctct |
24281816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 20164662 - 20165071
Alignment:
| Q |
13 |
cacttccatcatctgaggtcattacacctgatccaaagattgtaacatctatctctgagcaaggtttcataggaagaagttccaaggaaatcaatctaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20164662 |
cacttccatcatctgaggtcattacacctgatccaaagattgta---tctatttctgagcaaggtttcataggaagaagttccaaggaaatcaatctaga |
20164758 |
T |
|
| Q |
113 |
atcagagttgtataaagcccagttatgcagcatgcttctaggaagatcttcagtgtcatacacatcatagtcgttatcaaaaacgataaattcatctgtt |
212 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
20164759 |
atcagagttgtataaaacccagttatgaagcatgcttctaggaagatcttcagtgtaatacacgtcatagtcgttatcaaaaacgataaattcatctgtt |
20164858 |
T |
|
| Q |
213 |
tcttgaagagaagttttataataagcagggagagggtaatcatttgctatctcatcttcattgattttgatatagaatttgttagatgacgaggatgatc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20164859 |
tcttgaagagaagttttataataagcagggagagggtaatcatttgctatctcatcttcattgattttgatatagaatttgttagatgacgaggatgatc |
20164958 |
T |
|
| Q |
313 |
taggatttttcctctgcttctttgatttccagtactcttcttcctgcaacagtcttgctagctttgcatcttcatcttcttcatctacag---ccatctg |
409 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
20164959 |
tagggtttttcctctgcttctttgatttccagtactcttcttcctgcaatagccttgctagctttgcatcttcatcttcttcatctacagaatccatctg |
20165058 |
T |
|
| Q |
410 |
atccttcttctct |
422 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20165059 |
atccttcttctct |
20165071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 8054135 - 8054547
Alignment:
| Q |
13 |
cacttccatcatctgaggtcattacacctgatccaaagattgtaacatctatctctgagcaaggtttcataggaagaagttccaaggaaatcaatctaga |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8054135 |
cacttccatcatctgaagtcattacacctgatccaaagattgtaacatctatctctgagcaaggtttcataggaagaagttccaaggaaatcaatctaga |
8054234 |
T |
|
| Q |
113 |
atcagagttgtataaagcccagttatgcagcatgcttctaggaagatcttcagtgtcatacacatcatagtcgttatcaaaaacgataaattcatctgtt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
8054235 |
atcagagttgtataaagcccaattatgcagcatgcttctaggaagttcttcagtgtcatacacttcatagtctttatcaaaaactataaattcatctgtt |
8054334 |
T |
|
| Q |
213 |
tcttgaagagaagttttataataagcagggagagggtaatcatttgctatctcatcttcattgattttgatatagaatttgttagatgacgaggatgatc |
312 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
8054335 |
tcttgaagataagttttttaataagcagggagagggtaatcatttgctatctcttcttcattgattttgatatagaatttgttagatgaagaagatgatc |
8054434 |
T |
|
| Q |
313 |
taggatttttcctctgcttctttgatttccagtactcttcttcctgcaacagtcttgctagctttgcatcttcatcttcttcatctacag---ccatctg |
409 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
8054435 |
tagggtttttcctctgcttctttgatttccagtactcttcttcctgcaagagtcttgctagctttgcatcttcatcttcttcatccacagaatccatctg |
8054534 |
T |
|
| Q |
410 |
atccttcttctct |
422 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
8054535 |
atccttcatctct |
8054547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 12037769 - 12037361
Alignment:
| Q |
13 |
cacttccatcatctgaggtcattacacctgatccaaagattgtaacatctatctctgagcaaggtttcataggaagaagttccaaggaaatcaatctaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
12037769 |
cacttccatcatctgaggtcattacacctgatccaaagattggaacatctatttctgagcaaggtttcataggaagaagttccaacgaaatcaatcttga |
12037670 |
T |
|
| Q |
113 |
atcagagttgtataaagcccagttatgcagcatgcttctaggaagatcttcagtgtcatacacatcatagtcgttatcaaaaacgataaattcatctgtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12037669 |
atcagagttgtataaagcccagttatgcagcatgcttctaggaagatcttcagtgtcatacacatcatagtcgttatcaaaaacaataaattcatctgtt |
12037570 |
T |
|
| Q |
213 |
tcttgaagagaagttttataataagcagggagagggtaatcatttgctatctcatcttcattgattttgatatagaatttgttagatgacgaggatgatc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12037569 |
tcttgaagagaagttttataataagcagggagagggtaatcattggctatctcatcttcgttaattttgatatagaatttgttagatgacgaggatgat- |
12037471 |
T |
|
| Q |
313 |
taggatttttcctctgcttctttgatttccagtactcttcttcctgcaacagtcttgctagctttgcatcttcatcttcttcatctacag---ccatctg |
409 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
12037470 |
---ggtttttcctctgcttttttgatttccagtactcttcttcctgcaacagtcttgctagctttgcatcttcatcttcttcatgtacagaatccatctg |
12037374 |
T |
|
| Q |
410 |
atccttcttctct |
422 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
12037373 |
atccttcatctct |
12037361 |
T |
|
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