View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11099_low_5 (Length: 422)

Name: NF11099_low_5
Description: NF11099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11099_low_5
NF11099_low_5
[»] chr7 (18 HSPs)
chr7 (1-293)||(10287917-10288209)
chr7 (1-293)||(15873103-15873394)
chr7 (1-294)||(11035507-11035801)
chr7 (1-311)||(13163377-13163691)
chr7 (1-291)||(12195886-12196172)
chr7 (5-293)||(12910867-12911145)
chr7 (1-293)||(21490614-21490906)
chr7 (84-290)||(3692152-3692357)
chr7 (1-293)||(18366460-18366744)
chr7 (1-285)||(22078416-22078687)
chr7 (3-292)||(40106602-40106880)
chr7 (1-293)||(48652966-48653246)
chr7 (5-116)||(49169641-49169753)
chr7 (91-184)||(24053069-24053164)
chr7 (222-298)||(49169485-49169561)
chr7 (12-112)||(9994122-9994220)
chr7 (296-326)||(7646712-7646742)
chr7 (261-293)||(7646951-7646983)
[»] chr5 (17 HSPs)
chr5 (1-293)||(537608-537899)
chr5 (1-285)||(6309484-6309770)
chr5 (5-322)||(42862166-42862472)
chr5 (50-284)||(42640267-42640498)
chr5 (91-293)||(27027155-27027355)
chr5 (165-291)||(4557222-4557350)
chr5 (1-214)||(38001767-38001969)
chr5 (1-116)||(40691664-40691781)
chr5 (1-116)||(30910547-30910662)
chr5 (84-280)||(105425-105620)
chr5 (222-293)||(40691861-40691932)
chr5 (64-293)||(38279264-38279480)
chr5 (31-116)||(4557364-4557450)
chr5 (261-325)||(25043936-25044000)
chr5 (239-290)||(25674369-25674420)
chr5 (12-120)||(28201902-28202010)
chr5 (151-196)||(30910686-30910731)
[»] scaffold0657 (2 HSPs)
scaffold0657 (1-297)||(1460-1756)
scaffold0657 (144-322)||(8547-8723)
[»] chr3 (12 HSPs)
chr3 (1-293)||(46403725-46404018)
chr3 (1-294)||(16976106-16976399)
chr3 (1-293)||(5003856-5004147)
chr3 (1-285)||(7335826-7336110)
chr3 (1-293)||(43277168-43277460)
chr3 (165-293)||(17537618-17537751)
chr3 (1-291)||(11937021-11937306)
chr3 (1-293)||(9104886-9105168)
chr3 (54-294)||(3504511-3504747)
chr3 (91-273)||(37979833-37980014)
chr3 (209-280)||(31283653-31283724)
chr3 (261-293)||(5704965-5704997)
[»] chr1 (19 HSPs)
chr1 (1-294)||(338896-339187)
chr1 (1-293)||(43406494-43406785)
chr1 (1-293)||(37666316-37666597)
chr1 (1-291)||(35761147-35761448)
chr1 (130-294)||(51442504-51442672)
chr1 (1-295)||(6836683-6836968)
chr1 (5-112)||(18472249-18472356)
chr1 (1-67)||(8422345-8422411)
chr1 (214-291)||(19197952-19198029)
chr1 (149-280)||(44781389-44781518)
chr1 (203-293)||(20147830-20147919)
chr1 (261-325)||(20600486-20600550)
chr1 (91-164)||(25647809-25647883)
chr1 (95-179)||(33006887-33006972)
chr1 (84-158)||(19198065-19198137)
chr1 (249-293)||(15973884-15973929)
chr1 (151-196)||(18472176-18472221)
chr1 (241-282)||(33006746-33006787)
chr1 (261-293)||(24276435-24276467)
[»] chr6 (12 HSPs)
chr6 (1-293)||(32449393-32449684)
chr6 (1-293)||(34636975-34637266)
chr6 (25-293)||(23259757-23260025)
chr6 (1-293)||(26181816-26182111)
chr6 (1-293)||(10750755-10751047)
chr6 (216-322)||(19814712-19814818)
chr6 (1-293)||(13772546-13772827)
chr6 (84-294)||(24164654-24164863)
chr6 (4-112)||(20559585-20559693)
chr6 (36-180)||(31277966-31278108)
chr6 (261-293)||(11165776-11165808)
chr6 (261-293)||(31875831-31875863)
[»] chr2 (15 HSPs)
chr2 (1-293)||(40448269-40448559)
chr2 (1-291)||(44789295-44789589)
chr2 (1-295)||(34396977-34397273)
chr2 (138-293)||(32735251-32735403)
chr2 (1-285)||(40728576-40728848)
chr2 (1-295)||(41339389-41339672)
chr2 (1-273)||(18291901-18292161)
chr2 (1-116)||(35670071-35670185)
chr2 (100-279)||(28266290-28266470)
chr2 (130-293)||(12773566-12773737)
chr2 (261-326)||(19713477-19713542)
chr2 (262-309)||(11388027-11388074)
chr2 (240-293)||(35669623-35669676)
chr2 (1-112)||(29271371-29271482)
chr2 (261-293)||(19703916-19703948)
[»] chr4 (11 HSPs)
chr4 (1-293)||(40459739-40460029)
chr4 (1-280)||(28968374-28968656)
chr4 (1-192)||(70088-70278)
chr4 (1-293)||(2761219-2761512)
chr4 (26-196)||(42898238-42898406)
chr4 (1-106)||(49499844-49499950)
chr4 (1-103)||(55162980-55163082)
chr4 (222-323)||(34827863-34827965)
chr4 (249-293)||(70297-70341)
chr4 (255-326)||(41951146-41951218)
chr4 (222-273)||(19665190-19665239)
[»] scaffold0413 (1 HSPs)
scaffold0413 (1-293)||(220-511)
[»] chr8 (12 HSPs)
chr8 (1-293)||(44436890-44437181)
chr8 (122-293)||(22640563-22640735)
chr8 (1-293)||(40840649-40840943)
chr8 (4-129)||(22815622-22815748)
chr8 (1-293)||(41957597-41957877)
chr8 (1-116)||(6150308-6150424)
chr8 (12-293)||(26162358-26162631)
chr8 (91-157)||(35841029-35841096)
chr8 (222-293)||(6161743-6161814)
chr8 (262-318)||(29132249-29132305)
chr8 (170-293)||(35841086-35841207)
chr8 (261-293)||(4233108-4233140)
[»] scaffold0013 (1 HSPs)
scaffold0013 (63-293)||(240797-241003)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-184)||(32581-32763)
[»] scaffold1838 (2 HSPs)
scaffold1838 (1-103)||(975-1077)
scaffold1838 (151-186)||(1118-1153)
[»] scaffold0002 (1 HSPs)
scaffold0002 (261-324)||(356044-356107)
[»] scaffold0028 (1 HSPs)
scaffold0028 (262-325)||(147493-147556)
[»] scaffold0150 (1 HSPs)
scaffold0150 (262-325)||(34855-34918)
[»] scaffold0054 (1 HSPs)
scaffold0054 (175-280)||(32252-32356)
[»] scaffold0631 (1 HSPs)
scaffold0631 (261-293)||(5323-5355)
[»] scaffold0120 (1 HSPs)
scaffold0120 (261-293)||(1845-1877)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 10288209 - 10287917
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10288209 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattgggt 10288110  T
Q  100 ttttgattgaattgtaactttagtagaaattttt-gaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaa 198  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| ||    
T  10288109 ttttgattgaattgtaactttagtagaaattttttgaaggatattagtttaagagttttaattacattatgttaagaattttgtataggttttgctataa 10288010  T
Q  199 tatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10288009 tataa--tatagatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 10287917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 15873394 - 15873103
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||    
T  15873394 aaggaaattgacccttgcactaacattttaggtaccaaagaagagatgatctatgctttgaagtttttgctggaagtgtatacgggggacgaaattgggt 15873295  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| |      
T  15873294 ttttgattgaattgtaactttagtagaaatttttgaaggatattagtttaagagttttaattacattatgttaagaattttgtataggttttgctaga-- 15873197  T
Q  200 atatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15873196 atataatatagatgaagtaaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 15873103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 11035801 - 11035507
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||    
T  11035801 aaggaaattgacccttacactaacattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggg-acaaaattgggt 11035703  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||| |||||||| |||||||| |     
T  11035702 ttttgattgaattgtaactttagtagaaatttttgaaggatattagtttaagagttttaattaaattatgtcaagcattgtgtataggttttgctaaga- 11035604  T
Q  200 atatattattgatgaaataaataaatagtagtg--tttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacat 294  Q
    || || |||||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||    
T  11035603 atttactattgatgaaataaataaatagtagtgtttttttcagaaaaagaaaatgatttaggtgtaatgtcttggatctaaatccggagcgttacat 11035507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 13163691 - 13163377
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||| | |||||||||||||| ||||| |||||||||    
T  13163691 aaggaaattgacccttacactaatattttagataccaaagaatagatggtctatgctttgaagtttttgtttgaagtgcgtacgagggacaaaattgggt 13163592  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |||||||| |     
T  13163591 ttttgattgaattgtaactttaatagaaatttttgaaggatattagtttaagagttttaattaaattatgtcaagaattttgtataggttttgctaaga- 13163493  T
Q  200 atatattattgatgaaataaataaatagtagtgttttt--cag--aaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacatt 295  Q
    || |||||||||||||||||||||||||||||||||||  |||  ||||  ||||| |||||| ||||||||||||||||||||||||| |||||||||     
T  13163492 atttattattgatgaaataaataaatagtagtgtttttttcaggaaaaaaaaaaataatttagacgtaatgtcttggatcaaaatccggagcgttacatc 13163393  T
Q  296 atggtatcagagcaat 311  Q
    ||| ||||||||||||    
T  13163392 atgatatcagagcaat 13163377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 12196172 - 12195886
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||| |||||||||| |||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  12196172 aaggaaattgactcttacactaacattttaggtaccaaagaagagatggtctatactttgaagtttttgcttgaagtgcgtacgggggac-aaattgggt 12196074  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaa 198  Q
    ||||||| |||||||            || | || ||||||| ||| || ||||||||| |||||||||||||||||| |||||||||  |||||||| |    
T  12196073 ttttgatcgaattgt------------aaatgttaaaggatatttattttaagaattttcattaaattatgttaagaactttgtatagaatttgctaaga 12195986  T
Q  199 tatatattattgatgaaataaataaatagtagtgttt--------ttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgtt 290  Q
     || ||||||| |||||||||||||||||||||||||        ||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||    
T  12195985 -atttattatttatgaaataaataaatagtagtgttttttttttcttcagaaaaagaaaataatttaggcgtaatgtcttggatcaaaatctggggcgtt 12195887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 12911145 - 12910867
Alignment:
Q  5 aaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggttttt 103  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  12911145 aaattgacccttacactaatattttaggtaccaaagcagatatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattgggttttt 12911047  T
Q  104 gattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaatata 202  Q
    ||| |||||||            || |||| ||||||| ||| || | ||||||| ||||||||||||||||||||||||||||  |||||||| | ||     
T  12911046 gatcgaattgt------------aaattttaaaggatatttattttaggaatttttattaaattatgttaagaattttgtatagattttgctaaga-att 12910960  T
Q  203 tattattgatga--aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||||||||  || ||| ||||||||||| |||||  |||| |||||||| |||||||||||||||||||  ||||||||||||||||||    
T  12910959 tattattgatgattaaaaaaaaaatagtagtgattttcgaaaaaagaaaatgaattaggcgtaatgtcttggactaaaatccggggcgttaca 12910867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 21490906 - 21490614
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagttttgcttgaagtgcgtacgggggacgaaattgggtt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| ||| | |||||||||  ||||||||||||| |||| | ||||| ||||||||| |    
T  21490906 aaggaaattgacccttacactaacattttaggtaccaaagaagacatg-tgtatgctttggtgttttgcttgaagcgcgtgc-ggggaagaaattggg-t 21490810  T
Q  101 tttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaa-aa 198  Q
    ||| |||||||| ||| ||||||| | | |||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||  |||||||| ||    
T  21490809 tttaattgaattctaattttagta-ataattttgaaggatatttagtttgagaagtttaattaaattatgttaagaattttgtatagattttgctaagaa 21490711  T
Q  199 tatatattattgat---gaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |   ||||| ||||    ||| ||| |||| |||||  ||||| ||||| || ||||||||||||||||||||||||||||||||| |||||||||||    
T  21490710 ttattattaatgataaaaaaaaaaaaaaatggtagtaattttc-gaaaatgagaatgatttaggcgtaatgtcttggatcaaaatctggggcgttaca 21490614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 84 - 290
Target Start/End: Original strand, 3692152 - 3692357
Alignment:
Q  84 ggggacgaaattgggtttttgattgaattgtaactttagtagaaatttttgaaggatatt-agttcaagaattttaattaaattatgttaagaattttgt 182  Q
    ||||||||||||||||||| ||||||||||||| | ||| || |||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||    
T  3692152 ggggacgaaattgggtttt-gattgaattgtaattatagaagtaatttt-gaaggatatttagttaaagaattttaattaaattatgctaagaattttgt 3692249  T
Q  183 ataggctttgctaaaatatatattattgatgaaataaataa-atagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatc 281  Q
    ||| | |||||||| | || ||| |||||||| | ||| || |||||||||||||||  |||| |||||||| |||||||||||||||||||||||||||    
T  3692250 atatgttttgctaaga-atttatgattgatgataaaaaaaacatagtagtgtttttcgaaaaaagaaaatgagttaggcgtaatgtcttggatcaaaatc 3692348  T
Q  282 cggggcgtt 290  Q
    ||| |||||    
T  3692349 cggagcgtt 3692357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 18366744 - 18366460
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagttttgcttgaagtgcgtacgggggacgaaattgggtt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| ||| | ||  |||||  ||||||||||||| |||| | ||| | |||||||   |    
T  18366744 aaggaaattgacccttacactaacattttaggtaccaaagaagacatg-tgtacactttg--gttttgcttgaagcgcgtgcagggaa-gaaattga--t 18366651  T
Q  101 tttgattgaattgtaactttagtagaaatttttgaaggatatt-agttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    ||| |||||||||||| ||||| |  || ||| |||||||||| ||||  |||| ||||||||||||||||||||||||||||||||  |||||||| |     
T  18366650 tttaattgaattgtaattttagaaataacttt-gaaggatatttagtttgagaagtttaattaaattatgttaagaattttgtatagattttgctaaga- 18366553  T
Q  200 atatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    || ||||||| |||| | ||  ||||||||||  ||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  18366552 atttattattaatgataaaagaaaatagtagtaattttc-gaaaatgagaatgatttaggcgtaatgtcttggatcaaaattcggggcgttaca 18366460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 22078416 - 22078687
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||    
T  22078416 aaggaaattgacccttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-atattgggt 22078514  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||| || |||||||            || |||| |||||||||| || |  |||||| ||||||||||||||||| ||||||||||  |||||||| |     
T  22078515 ttttaatcgaattgt------------aaattttaaaggatattattttagtaattttcattaaattatgttaagatttttgtatagattttgctaaga- 22078601  T
Q  200 atatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggg 285  Q
    || ||||||| |||| || ||  ||||||| ||  ||||| ||||| || ||||  ||||||| ||||||||||||| |||||||||    
T  22078602 atttattattaatgataaaaaggaaatagtggtcattttc-gaaaatgagaatggattaggcgcaatgtcttggatcgaaatccggg 22078687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 3 - 292
Target Start/End: Original strand, 40106602 - 40106880
Alignment:
Q  3 ggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggttt 101  Q
    ||||||||||||||||| ||| |||||||||| | ||||||||||  |||||||||||||| |||||||||||||||||||||||||| ||||||| |||    
T  40106602 ggaaattgacccttacattaaaattttaggtacctaagaagagattgtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggattt 40106700  T
Q  102 ttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaa-ttttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    ||||| |||||||            || |||| ||||||| ||| || | ||| ||||| |||||||||||||||||||||||||||  |||||||| |     
T  40106701 ttgatcgaattgt------------aaattttaaaggatatttattttaggaatttttagttaaattatgttaagaattttgtatagattttgctaaga- 40106787  T
Q  200 atatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttac 292  Q
    || |||||||||||| || ||  ||||||||||  |||||  |||| || ||||| ||||| ||||||||||||||||||||||| ||||||||    
T  40106788 atttattattgatgataaaaagaaaatagtagtaattttc-taaaatgagaatgaattaggagtaatgtcttggatcaaaatccgaggcgttac 40106880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 48653246 - 48652966
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgta-cgggggacgaaattggg 98  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  48653246 aaggaaattgacccttacattaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtaccgggggac-aaattggg 48653148  T
Q  99 tttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaa 197  Q
    ||||| || |||||||            || |||| ||||||| ||| || | ||||||| |||||||||||| ||||||||||||| |  ||||||||     
T  48653147 ttttt-atcgaattgt------------aaattttaaaggatatttattttaggaatttttattaaattatgtaaagaattttgtattgattttgctaag 48653061  T
Q  198 atatatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    | || ||||||| |||| || ||  ||||||||||  |||||| |||| ||  |||| ||||| |||||||||||||||||||| | ||||||||||    
T  48653060 a-atttattattcatgataaaaagaaaatagtagtaattttca-aaaatgagcatgaattaggagtaatgtcttggatcaaaattcagggcgttaca 48652966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 49169753 - 49169641
Alignment:
Q  5 aaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggttttt 103  Q
    |||||||||| |||| ||| |||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||| |||||| ||||||    
T  49169753 aaattgacccctacattaacattttaggtaccaaagaagagatgttctatgatttgaagtttttgcttgaagtgcgtacgtgggac-aaattgagttttt 49169655  T
Q  104 ga-ttgaattgtaa 116  Q
     | |||||||||||    
T  49169654 tatttgaattgtaa 49169641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 24053164 - 24053069
Alignment:
Q  91 aaattgggttttt-gattgaattgtaactttagtagaaatttttgaaggatatt-agttcaagaattttaattaaattatgttaagaattttgtat 184  Q
    ||||||||||||| |||| ||||| ||||| |  ||| |||||||||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  24053164 aaattgggttttttgatttaattgcaacttcataagagatttttgaaggatatttaatttaagaattttaattaaattatgttaagaattttgtat 24053069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 49169561 - 49169485
Alignment:
Q  222 aaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacattatg 298  Q
    ||||||| ||| |||||  |||| || ||||||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  49169561 aaatagttgtgattttctaaaaatgagaatgatttaggcgtaatgtcttggaccaaaatccgaggcgttacaatatg 49169485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 9994122 - 9994220
Alignment:
Q  12 cccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggtttttgattgaa 110  Q
    |||| ||||||| |||||||||||||||||||| ||| | |||||||||  | |||||||||||  |||| | |||||||||||||||||||| ||| ||    
T  9994122 ccctaacactaacattttaggtatcaaagaagacatggtgtatgctttggtgtttttgcttgaa--gcgtgc-ggggacgaaattgggtttttaattaaa 9994218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 326
Target Start/End: Original strand, 7646712 - 7646742
Alignment:
Q  296 atggtatcagagcaataatcctcggacaaat 326  Q
    |||||||||||||||||||||||||||||||    
T  7646712 atggtatcagagcaataatcctcggacaaat 7646742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 7646951 - 7646983
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||||||||||| ||||||||||||||||||    
T  7646951 gtaatgtcttggatgaaaatccggggcgttaca 7646983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 537608 - 537899
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  537608 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctatgctttgaagtttttgctggaagtgcatacgggggacgaaattgggt 537707  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||| ||||||| |      
T  537708 ttttgattgaattgtaactttagtagaaatttttgaaggatattagtttaagagttttaattacattgtgttaagaattttgtataggttttgctaga-- 537805  T
Q  200 atatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  537806 atataatatagatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 537899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 6309484 - 6309770
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacggggg-acgaaattggg 98  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||| || ||||||||    
T  6309484 aaggaaattgacccttacactaacattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcatacggggggacaaaattggg 6309583  T
Q  99 tttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgtta---agaattttgtataggctttgcta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||| |   || |||||||||||  |||||||    
T  6309584 tttttgattgaattgtaactttagtagaaatttttgaaggatattagtt--tgagttttaattaaattatgtcaagcagcattttgtatagattttgcta 6309681  T
Q  196 aaatatatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggg 285  Q
    | | || ||||||| |||| || ||  |||||||||   ||||  ||||| || ||||| |||||||||||||||| ||||||||||||||    
T  6309682 aga-atttattattaatgataaaaagaaaatagtagaaatttt-tgaaaatgagaatgaattaggcgtaatgtcttagatcaaaatccggg 6309770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 5 - 322
Target Start/End: Original strand, 42862166 - 42862472
Alignment:
Q  5 aaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggttttt 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  42862166 aaattgacccttacactaatattttaggtaccaaagaagagatgatttatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggattttt 42862264  T
Q  104 gattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaatata 202  Q
    |||||||||||            || |||| ||||||| ||| || | ||||||| ||||||||||||||||||||||||||||  |||||||| | ||     
T  42862265 gattgaattgt------------aaattttaaaggatatttattttaggaatttttattaaattatgttaagaattttgtatagattttgctaaga-att 42862351  T
Q  203 tattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggat-caaaatccggggcgttacattatggt 300  Q
    ||||||| |||| || ||  ||||||||||  ||||| ||||| || ||||| |||||| |||||||||||||  |||||| |||||||||||||| |||    
T  42862352 tattattaatgataaaaagaaaatagtagtaattttc-gaaaatgagaatgaattaggcataatgtcttggataaaaaatctggggcgttacattaaggt 42862450  T
Q  301 atcagagcaataatcctcggac 322  Q
    ||||||| ||||||| ||||||    
T  42862451 atcagagtaataatcttcggac 42862472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 50 - 284
Target Start/End: Original strand, 42640267 - 42640498
Alignment:
Q  50 tctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggtttttgattgaattgtaactttagtagaaatttttgaaggatattagttc 148  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||| |||||||||||| ||||| || |||||| ||||||||||| ||     
T  42640267 tctatgctttgaagtttttgcttgaagtgcgtacggtggacgaa-ttggattttt-attgaattgtaattttagaagtaatttt-gaaggatattaattt 42640363  T
Q  149 aagaattttaattaaattatgttaagaattttgtataggctttgctaaaatatatattattgatga-aataaataaatagtagtgtttttcagaaaagga 247  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| | || |||||||||||| |||| | ||||||||||| ||||   |||| ||    
T  42640364 aagaattttaattaaattatgttaagaattttgtataggttttgctaaga-atttattattgatgataatata-aaatagtagtgatttttgaaaaatga 42640461  T
Q  248 aaatgatttaggcgtaatgtcttggatcaaaatccgg 284  Q
    |||||| |||||  ||||||||||||  |||||||||    
T  42640462 aaatgaattaggtataatgtcttggactaaaatccgg 42640498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 91 - 293
Target Start/End: Original strand, 27027155 - 27027355
Alignment:
Q  91 aaattgggtttttgattgaattgtaactttagtagaaatttttgaaggat-attagttcaagaattttaattaaattatgttaagaattttgtataggct 189  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| || |||| || |||||||||| |||||||||||||||||||||||||| | |    
T  27027155 aaattgggtttttgattgaattgtaactttagaagaaatttttgaagtataattattttaagaattttagttaaattatgttaagaattttgtataagtt 27027254  T
Q  190 ttgctaaaatatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgt 289  Q
    || |||| | || |||||||||||| | ||| |||||| | || ||||| ||| | |||||| | |||||||||||| |||||||| ||||||||||| |    
T  27027255 ttcctaata-atttattattgatgataaaaaaaaatagaaatgattttc-gaataagaaaataaattaggcgtaatgccttggatc-aaatccggggcat 27027351  T
Q  290 taca 293  Q
    ||||    
T  27027352 taca 27027355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 165 - 291
Target Start/End: Complemental strand, 4557350 - 4557222
Alignment:
Q  165 ttatgttaagaattttgtataggctttgctaaaatatatattattgatgaaataaataaatagtagtgtttttcaga--aaaggaaaatgatttaggcgt 262  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||  |||| |||||||||||    
T  4557350 ttatgttaagaattttgtataggttttgctagaatatatattattgatgaaataaataaatagtagtgtttttcaaaagaaaaaaaaaagatttaggcgt 4557251  T
Q  263 aatgtcttggatcaaaatccggggcgtta 291  Q
    ||||||||||| ||||||| | |||||||    
T  4557250 aatgtcttggaccaaaatctgaggcgtta 4557222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 38001767 - 38001969
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattggg- 98  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||     
T  38001767 aaggaaattggctcttacactaatattttaggtatcaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgagggac-aaattgggt 38001865  T
Q  99 tttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaa 197  Q
    |||||||| |||||||            || |||| ||||||| ||| || ||||||||| ||||||||||||||||||||||||||||  ||||||||     
T  38001866 tttttgatcgaattgt------------aaattttaaaggatatttattttaagaatttttattaaattatgttaagaattttgtatagattttgctaag 38001953  T
Q  198 atatatattattgatga 214  Q
    | || ||||||||||||    
T  38001954 a-atttattattgatga 38001969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 40691664 - 40691781
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||  |||||| ||    
T  40691664 aaggaaattgacccttacactaacattttaggtaccaaagaagatatggtctatgctttaaagtttttgcttgaagtgcgtacgggggaacaaattgagt 40691763  T
Q  100 ttttga-ttgaattgtaa 116  Q
    |||||| |||||||||||    
T  40691764 ttttgatttgaattgtaa 40691781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 30910547 - 30910662
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| | |||||||||||| |||||||| ||||||||||| || || |||||||||    
T  30910547 aaggaaattgacccttacactaatattttaggtacgaaagaagagatggtttatgctttgaagtttttgcttaaagtgcgtacgaggaac-aaattgggt 30910645  T
Q  100 ttttgattgaattgtaa 116  Q
    ||||||| |||||||||    
T  30910646 ttttgatcgaattgtaa 30910662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 84 - 280
Target Start/End: Original strand, 105425 - 105620
Alignment:
Q  84 ggggacgaaattgggtttttgattgaattgtaactttagtagaaatttttgaaggatatt-agttcaagaattttaattaaattatgttaagaattttgt 182  Q
    |||||| |||||| |||||||||| ||| |||| ||||| || ||||||  ||||||||| | || ||||||||||||| ||||||||||| || |||||    
T  105425 ggggacaaaattgagtttttgattaaatagtaattttagaagtaatttta-aaggatatttactttaagaattttaattgaattatgttaaaaaatttgt 105523  T
Q  183 ataggctttgctaaaatatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaat 280  Q
    ||||  ||| |||| | || |||||||||||| | ||| || ||||||||||||||  || | |||||||| ||||   |||||||||||||||||||    
T  105524 atagattttactaaga-atttattattgatgataaaaaaaattagtagtgtttttctaaacatgaaaatgaattagaaataatgtcttggatcaaaat 105620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 40691861 - 40691932
Alignment:
Q  222 aaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||||||| |||||  |||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  40691861 aaatagtagtgattttctaaaaatgaaaataatttaggcgtaatgtcttggatcaaaatccggggcgttaca 40691932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 293
Target Start/End: Original strand, 38279264 - 38279480
Alignment:
Q  64 ttttgcttgaagtgcgtacgggggacgaaattgggtttttgattgaattgtaactttagtagaaatttttgaaggatatt-agttcaagaattttaatta 162  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||            | ||||||||| | || | ||||||| ||||    
T  38279264 ttttgcttgaagtgcgtacgggggac-aaattgggtttttgatcgaattttaaattt------------taaaggatatttattttaggaatttttatta 38279350  T
Q  163 aattatgttaagaattttgtataggctttgctaaaatatatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcg 261  Q
    ||||||||||||||||||||||||  |||||||| | || ||||||| |||| || ||  ||||||||||  ||||| ||||| |  ||||| |||||||    
T  38279351 aattatgttaagaattttgtatagattttgctaaga-atttattattaatgataaaaagaaaatagtagtaattttc-gaaaatgtgaatgaattaggcg 38279448  T
Q  262 taatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||||| ||||||||||||  |||||||||    
T  38279449 taatgtctaggatcaaaatccaaggcgttaca 38279480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 4557450 - 4557364
Alignment:
Q  31 ggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggtttttgat-tgaattgtaa 116  Q
    |||| ||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  4557450 ggtaccaatgaagagatggtctatgctttgaagtttttgtttgaagtgcgtacgggggac-aaattgggtttttgatatgaattgtaa 4557364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 25044000 - 25043936
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttacattatggtatcagagcaataatcctcggacaaa 325  Q
    ||||||| |||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  25044000 gtaatgtattggattaaaattcggggtgttacaatatggtatcagagcaataatcctcggacaaa 25043936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 25674369 - 25674420
Alignment:
Q  239 agaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgtt 290  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||| ||||    
T  25674369 agaaaatgaaaatgatttaggcgtaatgtcttggattaaaatccgggacgtt 25674420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 28201902 - 28202010
Alignment:
Q  12 cccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtt-ttgcttgaagtgcgtacgggggacgaaattgggtttttgattgaa 110  Q
    ||||||||| ||||||||| |||| |||||||||||||| ||| |||||  ||| |||||||||| |||||| | ||| || ||||| ||||||||| ||    
T  28201902 cccttacaccaatattttaagtattaaagaagagatgatgtattctttggtgttcttgcttgaagcgcgtac-gaggatgatattggatttttgattaaa 28202000  T
Q  111 ttgtaacttt 120  Q
    ||| ||||||    
T  28202001 ttgaaacttt 28202010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 30910686 - 30910731
Alignment:
Q  151 gaattttaattaaattatgttaagaattttgtataggctttgctaa 196  Q
    ||||||| |||||||||| |||||||||||||||||  ||||||||    
T  30910686 gaatttttattaaattatattaagaattttgtatagattttgctaa 30910731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 1756 - 1460
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  1756 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctatactttgaagtttttgctggaagtgcatacgggggacgaaattgggt 1657  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| |||    
T  1656 ttttgattgaattgtaactttagtagaaatttttgaaggatattagtttaagagttttaattacattatgttaagaattttgtataggttttgctagaat 1557  T
Q  200 at-atattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacattat 297  Q
    || |||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1556 ataatataa--aatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttacattat 1460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 144 - 322
Target Start/End: Complemental strand, 8723 - 8547
Alignment:
Q  144 agttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaatatatattattgatgaaataaataaatagtagtgtttttcagaaa 243  Q
    |||| |||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||   ||| ||||||||||||||||||||||||||||||||||    
T  8723 agtttaagagttttaattacattatgttaagaattttgtataggttttgctagaatataa--tatagatgaaataaataaatagtagtgtttttcagaaa 8626  T
Q  244 aggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacattatggtatcagagcaataatcctcggac 322  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8625 aggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttacattatggtatcagagcaataatcctcggac 8547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 46404018 - 46403725
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46404018 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattgggt 46403919  T
Q  100 ttttgattgaattgtaactttagtagaaatt--tttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaa 197  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||  |||| ||||||||| |||||||||||||||||||||||| ||||||| |    
T  46403918 ttttgattgaattgtaactttagtagtaattattttgaaggatattagtataagagttttaattacattatgttaagaattttgtataggttttgctaga 46403819  T
Q  198 atatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46403818 atataa--tatagatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatctggggcgttaca 46403725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 16976106 - 16976399
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  16976106 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattgagt 16976205  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| || |||| |      
T  16976206 ttttgattgaattgtaactttagtagaaatttttgaaggatattagtttaagagttttaattacattatgttaagaattttgtataggtttggctaga-- 16976303  T
Q  200 atatattattgatgaaataaataaatagtagtg-tttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacat 294  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  16976304 atatattattgatgaaataaataaatagcagtgtttttttagaaaaggaaaatgatttaggagtaatgtcttggaccaaaatccggggcgttacat 16976399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 5004147 - 5003856
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5004147 aaggaaattgacccttacactaacattttaggtaccaaataagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattgggt 5004048  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||| ||||||| |      
T  5004047 ttttgattgaattgtaactttagtagaaatttttgaaggatattagtt-aagagttttaattacattatgttaaaaattttgtataggttttgctaga-- 5003951  T
Q  200 atatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgt-aatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  5003950 atataatatagatgaaataaataaatagtagtgttttttagaaaaggaaaatgatttaggcgtaaatgtcttggaccaaaatccggggcgttaca 5003856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 7336110 - 7335826
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7336110 aaggaaattgacccttacactaacattttaggtaacaaagaagagatgatttatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattgggt 7336011  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaa--ttaaattatgttaagaattttgtataggctttgctaaa 197  Q
    || |||||||||||||||||||||||||||||| ||||||| |||||| | || ||||||  || ||||| ||||||||||||||||||| ||||||| |    
T  7336010 ttgtgattgaattgtaactttagtagaaatttt-gaaggatcttagtttacgagttttaagttttaattacgttaagaattttgtataggttttgctaga 7335912  T
Q  198 atatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggg 285  Q
    |||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7335911 atataa--tatagatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggg 7335826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 43277460 - 43277168
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| ||||| |||||  | ||||||||||||||||||||||| || || ||||||    
T  43277460 aaggaaattgacccttacactaatattttaggtactaaagaagagatggtctatactttggtgtttttgcttgaagtgcgtacggggaac-aagttgggt 43277362  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggat-attagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaa 198  Q
    ||||||||||||||||||||||| | ||||||||||||||| |||| || |||||||||| |||||| ||||||||||||||||||||  |||||||| |    
T  43277361 ttttgattgaattgtaactttagaataaatttttgaaggataattattttaagaattttagttaaatgatgttaagaattttgtatagattttgctaaga 43277262  T
Q  199 tatatattattgatg-aaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
     || ||||||||||| ||| ||| ||||||||||  ||||  ||||| || ||||| ||||| ||||||| ||||||||||||| | |||||||||    
T  43277261 -atttattattgatgaaaaaaaaaaaatagtagtaatttt-tgaaaatgagaatgaattaggagtaatgtattggatcaaaatctgaggcgttaca 43277168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 17537751 - 17537618
Alignment:
Q  165 ttatgttaagaattttgtataggctttgctaaaatatatattattgatgaaataaataaatagtagtgt-----ttttcagaaaaggaaaatgatttagg 259  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||     |||||||||||  |||||||||||||    
T  17537751 ttatgttaagaattttgtataggttttgctagaatatatattattgatgaaataaataaatagtagtgttttttttttcagaaaaaaaaaatgatttagg 17537652  T
Q  260 cgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||||||||||| |||||||||||||||||||    
T  17537651 cgtaatgtcttggaacaaaatccggggcgttaca 17537618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 11937306 - 11937021
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagttttgcttgaagtgcgtacgggggacgaaattgggtt 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||| | |||||||||  ||||||||||||| |||| | |||||  |||||||| |    
T  11937306 aaggaaattgacccttacactaatattttaggtaccaaagaagacatg-tgtatgctttggtgttttgcttgaagcgcgtgc-ggggaaaaaattggg-t 11937210  T
Q  101 tttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    ||| |||||||||||| ||||  | | | |||||||||||| ||||||  |||  ||||||||||||||||||||||||||||||||  |||||||| |     
T  11937209 tttaattgaattgtaa-tttaagaaataattttgaaggatatttagtttgagatgtttaattaaattatgttaagaattttgtatagattttgctaaga- 11937112  T
Q  200 atatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgtta 291  Q
    || ||||||| |||| || ||  ||||||||||  ||||| |||||  | |||||||||||||||||||||||||| ||||| ||| ||||||    
T  11937111 at-tattattaatgataaaaagaaaatagtagtaattttc-gaaaataagaatgatttaggcgtaatgtcttggattaaaattcggagcgtta 11937021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 9104886 - 9105168
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagttt-tgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  9104886 aaggaaattgatccttgcactaatattttaggtaccaaagaagagattgtctatgctttgaagtttctgcttgaagtgcgtacgggggac-aaattgggt 9104984  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaa 198  Q
    |||  || |||||||            || |||| ||||||| ||| || | ||||||| ||||||||||| ||||||||||||||||  |||||||| |    
T  9104985 tttaaatcgaattgt------------aaattttaaaggatatttattttaggaatttttattaaattatgctaagaattttgtatagattttgctaaga 9105072  T
Q  199 tatatattattgatga-aataaataaatagtagt-gtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
     || |||||||||||| || ||  |||||||||| |||||||  |||| |  ||||| | ||||||||||||||||| ||||||| |||||||||||    
T  9105073 -atttattattgatgataaaaagaaaatagtagtagtttttcgaaaaatgtgaatgaataaggcgtaatgtcttggaccaaaatctggggcgttaca 9105168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 294
Target Start/End: Complemental strand, 3504747 - 3504511
Alignment:
Q  54 tgctttgaagttttgcttgaagtgcgtacgggggacgaaattgggtttttgattgaattgtaactttagtagaaatttttgaaggatatt-agttcaaga 152  Q
    |||||||  ||||||||||||| |||||||||| ||||||||| ||||| |||| |||||| | ||||| |||||  || |||||||||| |||| ||||    
T  3504747 tgctttggtgttttgcttgaagcgcgtacgggg-acgaaattgagttttcgattaaattgtga-tttagaagaaaggtt-gaaggatatttagtttaaga 3504651  T
Q  153 attttaattaaattatgttaagaattttgtataggctttgctaaaatatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatg 252  Q
    | ||||||||| |||||||||||||  |||||||| |||||||| | || ||||| |||||| | ||| |||||| |||||||||   ||||  || |||    
T  3504650 aatttaattaagttatgttaagaatcatgtataggttttgctaata-atttattagtgatgataaaaa-aaataggagtgttttttgaaaaataaatatg 3504553  T
Q  253 atttaggcgtaatgtcttggatcaaaatccggggcgttacat 294  Q
    | ||||||| |||||||||||||||||||||| |||||||||    
T  3504552 aattaggcgaaatgtcttggatcaaaatccggagcgttacat 3504511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 91 - 273
Target Start/End: Original strand, 37979833 - 37980014
Alignment:
Q  91 aaattgggtttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggct 189  Q
    ||||||||||||||||| ||||| |||||||| | | |||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||| | |    
T  37979833 aaattgggtttttgatttaattgcaactttagaatagatttttgaaggatatttaatttaagaattttaattaaattatgttaaaaattttgtatacg-t 37979931  T
Q  190 ttgctaaaatatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttgga 273  Q
    ||||||| | || |||||||||||| | ||| ||||| ||  ||||||   |||| || ||||| | |||||||||||||||||    
T  37979932 ttgctaaga-atttattattgatgataaaaaaaaataatatcgtttttagaaaaatgataatgaatgaggcgtaatgtcttgga 37980014  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 31283653 - 31283724
Alignment:
Q  209 tgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaat 280  Q
    |||| ||| ||| ||||| |||||||||||  ||||  ||||||| ||||||||||||||||||||||||||    
T  31283653 tgataaaaaaaaaaaatactagtgtttttcgaaaaataaaaatgaattaggcgtaatgtcttggatcaaaat 31283724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 5704965 - 5704997
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||||||||||||||||||||| |||||||    
T  5704965 gtaatgtcttggatcaaaatccgggacgttaca 5704997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 338896 - 339187
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  338896 aaggaaattgacccttgcactaacattttaggtaccaaagaagagatgatctatactttgaagtttttgcttgaagtgcttacgggggacgaaattgggt 338995  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||  ||||||| |||    
T  338996 ttttgattgaattgtaacttgagtagaaatttt-gaaggatattagtttaagagttttaattacattatgttaagaattttgtatagattttgctagaat 339094  T
Q  200 atatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacat 294  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  339095 at--attattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttacat 339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 43406785 - 43406494
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  43406785 aaggaaattgacccttgcactaacattttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacaggggacgaaattgggt 43406686  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgtt-aagaattttgtataggctttgctaaaa 198  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| |||||||| |||||||||||||||  ||||||| ||    
T  43406685 ttttgattgaattgtaacttgagtagaaatttt-gaaggatattagtttaagagttttaattacattatgttgaagaattttgtatagattttgctagaa 43406587  T
Q  199 tatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43406586 tatat--tattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 43406494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 37666597 - 37666316
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagttttgcttgaagtgcgtacgggggacgaaattgggtt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37666597 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctatgctttgtagttttgcttgaagtgcgtacgggggacgaaattgggtt 37666498  T
Q  101 tttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||| ||||||||||| ||||||| |  |    
T  37666497 tttgattgaattgtaactttagtagaaatttttgaaggatattag--------ttttaattacattatgttaagagttttgtataggttttgctaga--a 37666408  T
Q  201 tatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37666407 tatattattaatgaaataaataaatagtagtg-ttttcagaaaagaaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 37666316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 35761448 - 35761147
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| ||  |||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  35761448 aaggaaattgacccttacactaacattttaggtaccaaagaagatattgtctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattggat 35761349  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgct---aa 196  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||| |||| ||| |||||||||||  ||||||   ||    
T  35761348 ttttgattgaattgtaactttagtataaattttttaaggatattagtttaagagttttaattaaatcatgtcaagcattttgtatagtttttgctaagaa 35761249  T
Q  197 aatatatattattgatgaaataaataaatagtagtgttt-------ttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgt 289  Q
     ||||||||||||||||||||||||||||||||||||||       ||||||||| | |||| |||||||||||||||||||||||||||| ||||||||    
T  35761248 tatatatattattgatgaaataaataaatagtagtgtttttttttcttcagaaaaaggaaataatttaggcgtaatgtcttggatcaaaattcggggcgt 35761149  T
Q  290 ta 291  Q
    ||    
T  35761148 ta 35761147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 130 - 294
Target Start/End: Complemental strand, 51442672 - 51442504
Alignment:
Q  130 ttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaatatatattattgatgaaataaataaatagta 229  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  51442672 ttttgaaggatattagtttaagaattttatttaaattatgttaagaattttgtataggttttgctataatatatattattgatgaaataaataaatagta 51442573  T
Q  230 gtgt----ttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacat 294  Q
    ||||    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51442572 gtgtttttttttcaaaaaaagaaaataatttaggcgtaatgtcttggatcaaaatccggggcgttacat 51442504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 6836683 - 6836968
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagt-tttgcttgaagtgcgtacggggg-acgaaattggg 98  Q
    ||||||||||||||||||||||| |||||||||| ||||||||  ||| | |||||||||  || ||||||||||||||||||||||| |  ||||||||    
T  6836683 aaggaaattgacccttacactaacattttaggtaccaaagaaggaatggtgtatgctttggtgtgtttgcttgaagtgcgtacggggggaacaaattggg 6836782  T
Q  99 tttttgattgaattgtaactttagtagaaatttttgaaggatatt-agttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaa 197  Q
    ||||| |||||||||||| |||            | ||||||||| | || | ||||||| |||||||||||| |||||||||||||||  |||| |||     
T  6836783 ttttt-attgaattgtaaattt------------taaaggatatttattttaggaatttttattaaattatgtaaagaattttgtatagattttgttaag 6836869  T
Q  198 atatatattattgatgaaataaataaa-tagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatc-aaaatccggggcgttacatt 295  Q
    | || |||||||||||| | ||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  6836870 a-atttattattgatgataaaaagaaaatagtagtttttttcagaaaaagaaaatgatttaggcgtaatgtcttggatcaaaaatacggggcgttacatt 6836968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 18472356 - 18472249
Alignment:
Q  5 aaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggttttt 103  Q
    ||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||    
T  18472356 aaattgacccttacactaatattttagataccaaagaagagatggtctatgctttgaagtttttgcttgaagtgtgtacgggggac-aaattgggttttt 18472258  T
Q  104 gattgaatt 112  Q
    ||| |||||    
T  18472257 gatcgaatt 18472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8422345 - 8422411
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt 67  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  8422345 aaggaaattgacccttacactaacattttaggtaccaaagaagagatggtctatgctttgaagtttt 8422411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 19198029 - 19197952
Alignment:
Q  214 aaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgtta 291  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||| ||||||||||| |||||    
T  19198029 aaataaataaatagtagtgtttttacgaaaaagaaaatgatttaggtgtaatgtcttggaccaaaatccgggacgtta 19197952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 44781518 - 44781389
Alignment:
Q  149 aagaattttaattaaattatgttaagaattttgtataggctttgctaaaatatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaa 248  Q
    |||||||||||||||||||||||||||||| |||||||| |||| ||| | || |||||||||||| | ||| |||||| || | ||||   |||| |||    
T  44781518 aagaattttaattaaattatgttaagaattgtgtataggttttgttaaga-atttattattgatgata-aaaaaaatagcagcgcttttagaaaaatgaa 44781421  T
Q  249 aatgatttaggcgtaatgtcttggatcaaaat 280  Q
    ||||| ||||||||||||| ||||||||||||    
T  44781420 aatgaattaggcgtaatgttttggatcaaaat 44781389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 293
Target Start/End: Complemental strand, 20147919 - 20147830
Alignment:
Q  203 tattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||||||||||||||||||||| | ||||||| | |||||  |||||||||||| |||||||||||||| |||||| ||||||||||||    
T  20147919 tattattgatgaaataaataaataatggtgtttt-cggaaaaataaaatgatttagacgtaatgtcttggaccaaaattcggggcgttaca 20147830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 20600550 - 20600486
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttacattatggtatcagagcaataatcctcggacaaa 325  Q
    ||||||||||| || |||||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  20600550 gtaatgtcttgaattaaaatctggggcgttacaatatggtatcagagcgataatcctcggacaaa 20600486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 25647809 - 25647883
Alignment:
Q  91 aaattgggtttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaa 164  Q
    ||||||||||||||||| ||||| |||||||| ||| |||||||||||||| ||| || ||||||||||||||||    
T  25647809 aaattgggtttttgatttaattgcaactttagaagagatttttgaaggatatttaatttaagaattttaattaaa 25647883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 33006972 - 33006887
Alignment:
Q  95 tgggtttttgattgaattgtaactttagtagaaatttttgaaggatatt-agttcaagaattttaattaaattatgttaagaattt 179  Q
    ||||||||||||| ||||||| |||||| | | |||||| ||||||||| | || |||||||||||||||||||||| ||||||||    
T  33006972 tgggtttttgatttaattgtatctttagaaaagatttttaaaggatatttattttaagaattttaattaaattatgtaaagaattt 33006887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 19198137 - 19198065
Alignment:
Q  84 ggggacgaaattgggtttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaatttta 158  Q
    ||||| |||||||||||||| |||||||||||| ||||| || |||||| |||||||||||||| | ||||||||    
T  19198137 ggggatgaaattgggttttt-attgaattgtaattttagaagtaatttt-gaaggatattagtttaggaatttta 19198065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 15973884 - 15973929
Alignment:
Q  249 aatgatttaggcgtaatgtcttggat-caaaatccggggcgttaca 293  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||    
T  15973884 aatgaattaggcgtaatgtcttggataaaaaatccggggcgttaca 15973929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 18472221 - 18472176
Alignment:
Q  151 gaattttaattaaattatgttaagaattttgtataggctttgctaa 196  Q
    ||||||| ||||||||||||||| ||||||||||||  ||||||||    
T  18472221 gaatttttattaaattatgttaaaaattttgtatagtttttgctaa 18472176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 33006787 - 33006746
Alignment:
Q  241 aaaaggaaaatgatttaggcgtaatgtcttggatcaaaatcc 282  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  33006787 aaaatgaaaatgatttatgcgtaatgtcttggaccaaaatcc 33006746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 24276435 - 24276467
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||||||||||||||||| ||||||||||||    
T  24276435 gtaatgtcttggatcaaaattcggggcgttaca 24276467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 32449684 - 32449393
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtt-ttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  32449684 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctatgcattgaagttcttgcttgaagtgcgtacgggggacgaaattgggt 32449585  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    ||||||||||||||||||||  ||||||||||||||||||| | |||| |||| ||||||||| || ||||||||||||||||||| | ||| ||| |||    
T  32449584 ttttgattgaattgtaacttaggtagaaatttttgaaggatttaagtttaagagttttaattacatcatgttaagaattttgtataagtttttctagaat 32449485  T
Q  200 atatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32449484 atat--tattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 32449393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 34636975 - 34637266
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||  |||||||||||||||||| |    
T  34636975 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctatgctttgaagtttttgctggaagtgtatacgggggacgaaattggat 34637074  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| |      
T  34637075 ttttgattgaattgtaactttagtagaaatttttgaaggatattagtttaagagttttaattacattatgttaagaattttgtataggttttgctaga-- 34637172  T
Q  200 atatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  34637173 atataatatagatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatctggggcgttaca 34637266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 25 - 293
Target Start/End: Complemental strand, 23260025 - 23259757
Alignment:
Q  25 attttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggtttttgattgaattgtaactttagt 123  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23260025 attttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggatgaaattgggtttttgattgaattgtaactttagt 23259926  T
Q  124 agaaattttt-gaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaatatatattattgatgaaataaata 222  Q
    |||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| |||||||  |||||||||||||||||    
T  23259925 agaaattttttgaaggatattagtttaagagttttaattacattatgttaagaattttgtataggttttgctagaatatat--tattgatgaaataaata 23259828  T
Q  223 aatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  23259827 aatagtagtgtttttcagaaaagaaaaatgatttaggcgtaatgtcttagatcaaaatccggggcgttaca 23259757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 26182111 - 26181816
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||    
T  26182111 aaggaaattgacccttacactaacattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacggggaacaaaattgggt 26182012  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||| ||| |||||||||||| |||||||| |     
T  26182011 ttttgattgaattgtaactttagtagaaacttttgaaggatattagtttaag-agtttaattaaattatgtcaagcattttgtataggttttgctaaga- 26181914  T
Q  200 atatattattgatgaaataaataaatagtagtg----tttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    || |||||||||| |||||||||||||||||||    |||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  26181913 atttattattgatcaaataaataaatagtagtgtttttttttcagaaaaagaaaatgatttaggcgtaatgtcttggaacaaaatctggggtgttaca 26181816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 10751047 - 10750755
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10751047 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattgggt 10750948  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||||||||||||   |||||||| |     
T  10750947 ttttgattgaattgtaacttcagtagaaatttttgaatgatattagtttaagagttttaattaaattatgtaaagaattttgtataaattttgctaaga- 10750849  T
Q  200 atatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    || |||||||||||| || ||  ||||||||||  ||||| ||||| ||  |||| || || |||||||||||||| |||||  |||||||||||    
T  10750848 atttattattgatgataaaaagaaaatagtagtaattttc-gaaaatgagcatgaatttggagtaatgtcttggattaaaatttggggcgttaca 10750755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 19814818 - 19814712
Alignment:
Q  216 ataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacattatggtatcagagcaataatc 315  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19814818 ataaataaatagtagtatttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttacattatggtatcagagcaataatc 19814719  T
Q  316 ctcggac 322  Q
    |||||||    
T  19814718 ctcggac 19814712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 13772827 - 13772546
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattggg- 98  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||||     
T  13772827 aaggaaattgactcttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgctagaagtgcgtacgggggac-aaattgggt 13772729  T
Q  99 tttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaa 197  Q
    ||||| || |||||||            || |||| ||||||| ||| || | ||||||| ||||||||| || |||||||||||||||  ||||||||     
T  13772728 ttttttatcgaattgt------------aaattttaaaggatatttattttaggaatttttattaaattacgtaaagaattttgtatagattttgctaag 13772641  T
Q  198 atatatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    | || |||||||||||| || ||  ||||||||||  ||||  ||||| ||  |||| ||||| ||||||||||||||||||||| |||||||||||    
T  13772640 a-atttattattgatgataaaaagaaaatagtagtaatttt-tgaaaatgagcatgaattaggagtaatgtcttggatcaaaatctggggcgttaca 13772546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 84 - 294
Target Start/End: Original strand, 24164654 - 24164863
Alignment:
Q  84 ggggacgaaattgggtttttg--attgaattgtaactttagtagaaatttttgaaggatatt-agttcaagaattttaattaaattatgttaagaatttt 180  Q
    |||||| |||||||||||||   |||||||||||| ||||| |  |||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  24164654 ggggacaaaattgggtttttttaattgaattgtaattttagaaataatttt-gaaggatatttagtttaagaatttttattaaattatgttaagaatttt 24164752  T
Q  181 gtataggctttgctaaaatatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaat 280  Q
    ||||  | |||||||| | || |||||||||||| | ||| ||||||| |  |||||   |||| |||||||| |||||| |||||||||||||||||||    
T  24164753 gtat--gttttgctaaga-atttattattgatgataaaaaaaaatagtggcatttttagaaaaatgaaaatgaattaggcataatgtcttggatcaaaat 24164849  T
Q  281 ccggggcgttacat 294  Q
    ||||||||||||||    
T  24164850 ccggggcgttacat 24164863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 20559585 - 20559693
Alignment:
Q  4 gaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagttttgcttgaagtgcgtacgggggac-gaaattgggtttt 102  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||| | |||||||||  ||||||||||||| |||  ||||||||  ||||||||||||    
T  20559585 gaaattgacccttacagtaacattttaggtatcaaagaagacatggtgtatgctttggtgttttgcttgaagagcg-gcgggggacacaaattgggtttt 20559683  T
Q  103 tgattgaatt 112  Q
    |||| |||||    
T  20559684 tgatcgaatt 20559693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 31278108 - 31277966
Alignment:
Q  36 caaagaagagatgatctatgctttgaagttttg-cttgaagtgcgtacgggggacgaaattgggtttttgattgaattgtaactttagtagaaatttttg 134  Q
    ||||||||||||||| | |||||||  |||||  ||||| | ||||||| || || || ||| | ||||||||||||||||| ||||  ||||    |||    
T  31278108 caaagaagagatgatgtttgctttggtgtttttacttgatgcgcgtacgagg-acaaatttgaggttttgattgaattgtaattttaaaagaa----ttg 31278014  T
Q  135 aaggatatt-agttcaagaattttaa-ttaaattatgttaagaatttt 180  Q
    ||||||||| |||| || |||||||| |||||||||||||||||||||    
T  31278013 aaggatatttagtttaataattttaaattaaattatgttaagaatttt 31277966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 11165808 - 11165776
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||||||||||||||||| |||||||||||    
T  11165808 gtaatgtcttggatcaaaatctggggcgttaca 11165776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 31875831 - 31875863
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||||||||||||||||||| |||||||||    
T  31875831 gtaatgtcttggatcaaaatccgaggcgttaca 31875863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 40448269 - 40448559
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  40448269 aaggaaattgacccttgcactaacattttaggtaccaaagaagagatgatctatactttgaagtttttgcttgaagtgcttacgggggacgaaattgggt 40448368  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||  ||||||| ||     
T  40448369 ttttgattgaattgtaacttgagtagaaatttt-gaaggatattagtttaagagttttaattacattatgttaagaattttgtatagattttgctagaac 40448467  T
Q  200 atatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40448468 atat--tattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 40448559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 44789295 - 44789589
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtt-ttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||  || |||||||||||||||| |||| ||||||||||||  ||||| |||||||||    
T  44789295 aaggaaattgaccctcacactaacattttaggtaccaaagaaga--tggtctatgctttgaagttattgcctgaagtgcgtacatgggacaaaattgggt 44789392  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| || || ||| |||||||||||| |||||||| |     
T  44789393 ttttaattgaattgtaactttagtagaaacttttgaaggatattagtttaagagttttaattaaaataagtcaagcattttgtataggttttgctaaga- 44789491  T
Q  200 atatattattgatgaaataaataaatagtagtg-----tttttcagaaaaggaaaatgatttaggcgtaatgtc-ttggatcaaaatccggggcgtta 291  Q
    || ||||||||||||||||||||||||||||||     |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  44789492 atttattattgatgaaataaataaatagtagtgttttttttttcagaaaaagaaaatgatttaggcgtaatgtctttggatcaaaatctggggtgtta 44789589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 34397273 - 34396977
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||||| ||||||||| ||||||||| || |||||| ||    
T  34397273 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctgagctttgaagtttttgcttgaagtacgtacggggaacaaaattgagt 34397174  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||| |||||  ||| |||| |     
T  34397173 ttttgattggaatgtaactttagtagaaatttttgaaggatattagtttaagagtttt-attaaattatgtcaagaattttatatagattttactaaga- 34397076  T
Q  200 atatattattgatgaaataaataaatagtag--tgtttttcagaaaaggaaaatgatttaggcgtaatgt-cttggatcaaaatccggggcgttacatt 295  Q
    |  ||||||||||||||||||||||||||||  | |||||||| |||  ||||| ||||||||||||||| |||||||||||||| | |||||||||||    
T  34397075 acttattattgatgaaataaataaatagtagtttttttttcaggaaaaaaaaataatttaggcgtaatgtccttggatcaaaatctgaggcgttacatt 34396977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 138 - 293
Target Start/End: Complemental strand, 32735403 - 32735251
Alignment:
Q  138 gatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaatatatattattgatgaaataaataaatagtagtgttttt 237  Q
    |||||||||| |||| ||| ||||| || ||||||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||||||||    
T  32735403 gatattagtttaagagttt-aattacatgatgttaagaattttgtataggttttgctagaatatat--tattgatgaaataaataaatagtagtgttttt 32735307  T
Q  238 cagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||    
T  32735306 cagaaaaggaaaatgatttaggcgaaatgtcttggaccaaaattcggggcgttaca 32735251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 40728848 - 40728576
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  40728848 aaggaaattgacccttacactaatattttaggtaccaaagaagagatagtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattgggt 40728750  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaa 198  Q
    ||||||| |||||||            || |||| || |||| ||| || | ||||||| ||||||||||||||||||||||||||||  |||||||| |    
T  40728749 ttttgatcgaattgt------------aaattttaaacgatatttattttaggaatttttattaaattatgttaagaattttgtatagattttgctaaga 40728662  T
Q  199 tatatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggg 285  Q
     || ||||||||||||  | ||  ||||||||||  ||||| ||||| || ||||| ||||| |||||||||||||||||||| ||||    
T  40728661 -atttattattgatgatgaaaagaaaatagtagtaattttc-gaaaatgagaatgaattaggagtaatgtcttggatcaaaattcggg 40728576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 41339672 - 41339389
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag--ttttgcttgaagtgcgtacgggggacgaaattggg 98  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||| || |||||||||||  |||||||||||||||||| ||||||| ||||| ||    
T  41339672 aaggaaattgacccttacactaatattttaggtacgaaagaaaagatggtccatgctttgaagttttttgcttgaagtgcgtatgggggac-aaattagg 41339574  T
Q  99 tttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaa 197  Q
    ||||| || |||||||            || |||| ||||||| ||| || | ||||||| ||||||||||||||||||||||||||||  ||| ||||     
T  41339573 ttttttatcgaattgt------------aaattttaaaggatatttattttaggaatttttattaaattatgttaagaattttgtatagattttactaag 41339486  T
Q  198 atatatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacatt 295  Q
    | || |||||||||||| || ||  ||||||||||  ||||  ||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  41339485 a-atgtattattgatgataaaaagaaaatagtagtaatttt-tgaaaatgagaatgaattaggcgtaatgtcttggatcaaaatccggggcgtcacatt 41339389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 18292161 - 18291901
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| || ||||||  ||||||||     
T  18292161 aaggaaattgacccttacactaacattttaggtaccaaagaagagatgatttatgctttgaagtttttgcttgaagtgcatatggggga-taaattggg- 18292064  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaa 198  Q
    ||||||| |||||||||             | ||  |||||| ||| || ||||||||| |||||||||||||||||| |||||||||  |||||||| |    
T  18292063 ttttgatcgaattgtaa-------------tgttataggatatttattttaagaattttcattaaattatgttaagaactttgtatagattttgctaaga 18291977  T
Q  199 tatatattattgatgaaat--aaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttgga 273  Q
     || || ||||||||||||  ||| |||||||| ||||||||  |||| | |||||| |||| |||| |||||||||    
T  18291976 -atttactattgatgaaataaaaaaaaatagtactgtttttcgaaaaatggaaatgaattagacgtagtgtcttgga 18291901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 35670185 - 35670071
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||||||||||||||| |||||||| ||||| |||    
T  35670185 aaggaaattgacccttacactaatattttaggtaccaaagaagagatggtatatgctttgaagtttttgcttgaagtgcgttcgggggac-aaattaggt 35670087  T
Q  100 ttttgattgaattgtaa 116  Q
    |||| || |||||||||    
T  35670086 tttt-atcgaattgtaa 35670071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 100 - 279
Target Start/End: Complemental strand, 28266470 - 28266290
Alignment:
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatatt-agttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaa 198  Q
    |||| ||| |||||||||||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||| |||||||| |    
T  28266470 ttttaattaaattgtaactttagaagaaatttttgaaggatatttattttaagaattttaattaaattatgttaagaatcttgtataggttttgctaaca 28266371  T
Q  199 tatatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaa 279  Q
     |  |||||||||||| || | | ||| | |||||||||||  |||| || ||||| ||||||||  |||||||||| ||||    
T  28266370 -agttattattgatgataaaataaaaacaatagtgtttttcgaaaaatgagaatgaattaggcgtggtgtcttggataaaaa 28266290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 130 - 293
Target Start/End: Complemental strand, 12773737 - 12773566
Alignment:
Q  130 ttttgaaggatatt-agttcaagaattttaattaaattatgttaagaattttgtataggctttgct---aaaatatatattattgatgaaataaa----t 221  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||  |||  |   |||| || |||||||||||| | |||    |    
T  12773737 ttttgaaggatatttagtttgagaattttaattaaattatgttaagaattttgtatagtttttttttaaaaaaaatttattattgatgataaaaaataat 12773638  T
Q  222 aaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||||||| |||||  ||||  |||||||||||  ||||||||||||||||||||||||| ||||||||    
T  12773637 aaatagtagtgattttcgaaaaaataaaatgatttaaacgtaatgtcttggatcaaaatccggagcgttaca 12773566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 19713542 - 19713477
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttacattatggtatcagagcaataatcctcggacaaat 326  Q
    |||||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||| ||||    
T  19713542 gtaatgtcttggattaaaatccgaggcgttataatatggtatcagagcaataatcctcggaaaaat 19713477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 11388027 - 11388074
Alignment:
Q  262 taatgtcttggatcaaaatccggggcgttacattatggtatcagagca 309  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  11388027 taatgtcttggatgaaaatctggggcattacattatggtatcagagca 11388074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 35669676 - 35669623
Alignment:
Q  240 gaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||| || ||||| ||||||||||||||||| |||||||||| ||||||||||    
T  35669676 gaaaatgagaatgaattaggcgtaatgtcttgaatcaaaatccagggcgttaca 35669623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 29271371 - 29271482
Alignment:
Q  1 aaggaaattga-cccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||| ||| ||||| || |||||||||||||||||||| | | | |||| ||||  ||||| ||||||| |||||  | ||| ||||||||||    
T  29271371 aaggaaattgagcccatacaccaacattttaggtatcaaagaagatacggtgtatgatttggtgttttccttgaagcgcgta-tgtggatgaaattgggt 29271469  T
Q  100 ttttgattgaatt 112  Q
    | |||||||||||    
T  29271470 tattgattgaatt 29271482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 19703948 - 19703916
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||||||||||| ||||||||||||||||||    
T  19703948 gtaatgtcttggattaaaatccggggcgttaca 19703916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 40459739 - 40460029
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  40459739 aaggaaattgacccttgcactaacattttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacaggggacgaaattgggt 40459838  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgtt-aagaattttgtataggctttgctaaaa 198  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||| ||||| |||||||| |||||||||||||||  ||||||| ||    
T  40459839 ttttgattgaattgtaacttgagtagaaatttt-gaaggatattagtttaagagttt-aattacattatgttgaagaattttgtatagattttgctagaa 40459936  T
Q  199 tatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40459937 tat--attattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 40460029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 28968656 - 28968374
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattggg- 98  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||| ||||||||||| |||||||||| ||||| ||     
T  28968656 aaggaaattgacccttacactaacattttaggtaccaaagaaaagatggtctatgctttgaagtttttgcttgaagtgcatacgggggacaaaatttgga 28968557  T
Q  99 tttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| ||| |||||||||||| |||||||| |    
T  28968556 tttttgattgaattgtaactttagtagaaatttttgaaggatattaatttaagagttttaattaaattatgtcaagcattttgtataggttttgctaaga 28968457  T
Q  199 tatatattattgatgaaataaataaatagtagtg--tttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaat 280  Q
     || |||||| |||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  28968456 -atttattatcgatgaaataaataaatagtagtgtttttttcagaaaaagaaaatgatttagacgtaatatcttggatcaaaat 28968374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 70088 - 70278
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||| ||||||||||| ||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  70088 aaggaaattgatccttacactaacattttagataccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattgagt 70187  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttg 192  Q
    |||| |||||||||||| ||||| || || ||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||    
T  70188 tttt-attgaattgtaattttagaagtaa-ttttgaatgatattagtttaagaattttaattacattatgttaagaattttgtataggttttg 70278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 2761512 - 2761219
Alignment:
Q  1 aaggaaattgacccttacac--taatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgg 97  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| ||| | |||||||||  ||||| |||||||| ||||||| || ||||||||||    
T  2761512 aaggaaattgacccttacacactaatattttaggtatcaaagaagacatggtgtatgctttggtgtttttgcttgaagcgcgtacgagg-acgaaattgg 2761414  T
Q  98 gtttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaatttt-aattaaattatgttaagaattttgtataggctttgctaa 196  Q
    |||||| |||||||| |||  |||| || |||||| |||||||| ||||| ||||||||| ||||||||||||| || ||||||||||||  ||||||||    
T  2761413 gttttt-attgaattttaatattagaagtaatttt-gaaggatagtagtttaagaatttttaattaaattatgt-aataattttgtatagattttgctaa 2761317  T
Q  197 aatatatattattgatgaaataaataaatagtagtgtttttc--agaaaag-gaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
     | || |||||||||||| | ||  ||||||||| ||||||   ||||||  |||||||| |||| ||||||||||| ||||||||| ||  ||||||||    
T  2761316 ga-atttattattgatgataaaataaaatagtagcgttttttttagaaaaatgaaaatgaattagacgtaatgtctt-gatcaaaattcgaagcgttaca 2761219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 42898406 - 42898238
Alignment:
Q  26 ttttaggtatcaaagaagagatgatctatgctttgaagt-tttgcttgaagtgcgtacgggggacgaaattgggtttttgattgaattgtaactttagta 124  Q
    |||||||||| |||||||||||| |||| |||||||||  |||||||||||||||||||||     ||||||||||||||||||| |||||| |||||      
T  42898406 ttttaggtattaaagaagagatg-tctacgctttgaagcgtttgcttgaagtgcgtacgggtat--aaattgggtttttgattgagttgtaattttagat 42898310  T
Q  125 gaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaa 196  Q
    |||||||| || ||||| |||||| ||||||||| ||||||||||||||||||| ||||||||| | ||||||    
T  42898309 gaaatttt-gatggataattagtttaagaatttttattaaattatgttaagaatcttgtataggttgtgctaa 42898238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 49499844 - 49499950
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt--gcttgaagtgcgtacgggggacgaaattggg 98  Q
    ||||||||||||||||||||||| |||||||||   |||||||||||| ||||||||||||||||||  |||||||||||||||||||||| |||||| |    
T  49499844 aaggaaattgacccttacactaacattttaggtgctaaagaagagatggtctatgctttgaagtttttcgcttgaagtgcgtacgggggac-aaattgag 49499942  T
Q  99 tttttgat 106  Q
    ||||||||    
T  49499943 tttttgat 49499950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 55162980 - 55163082
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||| |||| ||||||||| |||||| | || |||||||||    
T  55162980 aaggaaattgacccttacactaacattttaggcaccaaagaagagatggtctatgctttgaagtttttacttgaagtgtgtacggcgaac-aaattgggt 55163078  T
Q  100 tttt 103  Q
    ||||    
T  55163079 tttt 55163082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 323
Target Start/End: Complemental strand, 34827965 - 34827863
Alignment:
Q  222 aaatagtagtgttttt-cagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttacattatggtatcagagcaataatcctcgg 320  Q
    |||||||||||||||| || |||| |||||||| ||  ||||||||||||| ||||||||| | | |||||||||||||||||| ||||||| |||||||    
T  34827965 aaatagtagtgttttttcaaaaaatgaaaatgaatttagcgtaatgtcttgaatcaaaatctgagacgttacattatggtatcatagcaatagtcctcgg 34827866  T
Q  321 aca 323  Q
    |||    
T  34827865 aca 34827863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 70297 - 70341
Alignment:
Q  249 aatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  70297 aatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 70341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 41951218 - 41951146
Alignment:
Q  255 ttaggcgtaatgtcttggatc-aaaatccggggcgttacattatggtatcagagcaataatcctcggacaaat 326  Q
    |||| |||||||||||||||  ||||||||||  ||||||||||||||| ||||||||| |||||||||||||    
T  41951218 ttagacgtaatgtcttggatttaaaatccgggatgttacattatggtataagagcaatagtcctcggacaaat 41951146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 19665239 - 19665190
Alignment:
Q  222 aaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttgga 273  Q
    ||||||||||| |||| | ||||  |||||||||||||||||||||||||||    
T  19665239 aaatagtagtgatttttaaaaaa--aaaatgatttaggcgtaatgtcttgga 19665190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 220 - 511
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  220 aaggaaattgacccttacactaacattttaggtaacaaagaagagatgatttatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattgggt 319  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaat 199  Q
    ||||||||||||| ||||||||||||||| | |||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||| ||||||| |      
T  320 ttttgattgaattttaactttagtagaaactcttgaaggatattagtttaagagttttaattacattatcttaagaattttgtataggttttgctaga-- 417  T
Q  200 atatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||    
T  418 atataatatagatgaaataaataaatagtagtgtttttcagaaaaagaaaatgagttagacgtaatgtcttggaccaaaatccggggcgttaca 511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 44436890 - 44437181
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  44436890 aaggaaatcgacccttacactaacattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtatgggggac-aaattgggt 44436988  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaa 198  Q
    ||||||||||||||||||||||| ||||| |||||||||||| ||||||  ||||| |||||||||||||||||||||||||||||| | ||| |||| |    
T  44436989 ttttgattgaattgtaactttagaagaaa-ttttgaaggatatttagtttgagaatcttaattaaattatgttaagaattttgtataagtttttctaata 44437087  T
Q  199 tatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
     || |||||||||||| | ||| |||| ||||  |||||   |||| |||||||| | |||  |||||||||  |||||||||||||||||||||    
T  44437088 -atttattattgatgataaaaaaaaatggtagcatttttagaaaaatgaaaatgaatcaggtataatgtcttcaatcaaaatccggggcgttaca 44437181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 122 - 293
Target Start/End: Complemental strand, 22640735 - 22640563
Alignment:
Q  122 gtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaatatatattattgatgaaataaat 221  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||| |  | |||||||||| ||||||||    
T  22640735 gtagaaatttttgaaggatattagtttaagagtttta-ttaaattatgtcaagaattttgtataggctttgctaagaact-tattattgattaaataaat 22640638  T
Q  222 aaatagtagtgttttt---cagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||| ||||||||   || |||| |||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  22640637 aaatagtcgtgttttttttcaaaaaaagaaaataatttaggcgtaatgtcttgtatcaaaattcggggcgttaca 22640563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 40840943 - 40840649
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||   ||||||| |    
T  40840943 aaggaaattgacccttacactaacattttatgtaccaaagaagagatggtctatgctttaaagtttttgcttgaagtgcgtacggggggacaaattggat 40840844  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggatatt-agttcaagaattttaattaaattatgttaagaa-ttttgtataggctttgctaaa 197  Q
    ||||||||||||||||| || |  || || |||||||||||||| | || ||||||||||||||  ||| |||||||| ||||||||||| |||  | ||    
T  40840843 ttttgattgaattgtaatttgaaaagtaa-ttttgaaggatattcattttaagaattttaattatgttaggttaagaatttttgtataggtttttgttaa 40840745  T
Q  198 atatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
      || |||||||||||| |   | ||| ||||   |||||   |||| |||||||| ||||| ||||||| ||||| |||||||||||||||||||    
T  40840744 gaatttattattgatgataagcaaaaaaagtacatttttttgaaaaatgaaaatgaattaggtgtaatgttttggaccaaaatccggggcgttaca 40840649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 22815748 - 22815622
Alignment:
Q  4 gaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagtttt-gcttgaagtgcgtacgggggacgaaattgggtttt 102  Q
    |||||||||||||||| ||| |||||||||| ||| ||||||||  |||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  22815748 gaaattgacccttacattaacattttaggtaccaatgaagagatagtctatgatttgaagtttttgcttgaagtgcgtacgggggacgaaattgggtttt 22815649  T
Q  103 tgattgaattgtaactttagtagaaat 129  Q
    |||||||||||||||||||||||||||    
T  22815648 tgattgaattgtaactttagtagaaat 22815622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 41957877 - 41957597
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||  ||||||| |    
T  41957877 aaggaaattgacccttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgtagtgcgtatggggga-taaattggat 41957779  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatgttaagaattttgtataggctttgctaaaa 198  Q
    ||||||| ||||||||| |||  |||          |||||| ||| || | ||||||| ||||||||||||||||||||||||||||  |||||||| |    
T  41957778 ttttgatcgaattgtaaattt--tag----------aggatatttattttaggaatttttattaaattatgttaagaattttgtatagattttgctaaga 41957691  T
Q  199 tatatattattgatga-aataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
     || ||||||||||||  | ||  ||||||||||  ||||| ||||| |||||||| ||||| ||||||||||| ||||||||||  |||||||||    
T  41957690 -atttattattgatgatgaaaagaaaatagtagtaattttc-gaaaatgaaaatgaattaggagtaatgtcttgaatcaaaatccaaggcgttaca 41957597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 6150308 - 6150424
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||| |||    
T  6150308 aaggaaattgacccttacactaacattttagataccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacggaggac-aaattaggt 6150406  T
Q  100 ttttgat-tgaattgtaa 116  Q
    ||||||| ||||||||||    
T  6150407 ttttgatctgaattgtaa 6150424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 26162358 - 26162631
Alignment:
Q  12 cccttacactaatattttaggtatcaaagaagagatgatctatgctttgaagttttgcttgaagtgcgtacgggggacgaaattgggtttttg-attgaa 110  Q
    ||||||||| || |||||||||   ||||||||||||||    ||||||  ||||||| ||||| |||| ||||| |||||| |||||||||| ||| ||    
T  26162358 cccttacaccaacattttaggttctaaagaagagatgat----gctttggtgttttgcatgaagagcgtgcgggg-acgaaaatgggtttttggattaaa 26162452  T
Q  111 ttgtaactttagtagaaatttttgaaggatattagttcaagaattttaattaaattatgttaagaatttt-gtataggcttt-gctaaaatatatattat 208  Q
    |||||| | ||  ||| | ||| || |||||||  ||||| | |||||||||||||||| |||||||||| ||||||| ||| | | | | || ||||||    
T  26162453 ttgtaattgtaa-agataatttgga-ggatatttattcaa-agttttaattaaattatgctaagaattttcgtataggtttttggtgaga-atttattat 26162548  T
Q  209 tgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||| |||  ||  |||||||||  |||||  |||| || ||||||||||||||||||||||| |||||||||| ||||||||||    
T  26162549 tgataaaaagaa--aatagtagtaattttcgaaaaaagagaatgatttaggcgtaatgtcttgaatcaaaatccagggcgttaca 26162631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 35841029 - 35841096
Alignment:
Q  91 aaattgggtttttgattgaattgtaactttagtagaaatttttgaaggat-attagttcaagaatttt 157  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||| || |||||||||    
T  35841029 aaattgggtttttgattgaattgtaactctagaagaaaattttgaaggataattaatttaagaatttt 35841096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 6161743 - 6161814
Alignment:
Q  222 aaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 293  Q
    ||||||||||| |||||  ||||  | ||| ||||||||||||||||||||| |||||| ||||||||||||    
T  6161743 aaatagtagtgattttctaaaaataagaataatttaggcgtaatgtcttggaccaaaattcggggcgttaca 6161814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 29132305 - 29132249
Alignment:
Q  262 taatgtcttggatcaaaatccggggcgttacattatggtatcagagcaataatcctc 318  Q
    ||||||| |||||| ||||| || ||||||||| ||||| |||||||||||||||||    
T  29132305 taatgtcatggatctaaatctggagcgttacataatggtgtcagagcaataatcctc 29132249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 293
Target Start/End: Original strand, 35841086 - 35841207
Alignment:
Q  170 ttaagaattttgtataggctttgctaaaatatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtct 269  Q
    |||||||||||||||| | ||| |||| | || |||||||||||| | | | |||||||||| ||||| | |||| || ||||  ||| |||||||||||    
T  35841086 ttaagaattttgtataagtttttctaata-atttattattgatgataaacaaaaatagtagtatttttga-aaaatgagaatgtattaagcgtaatgtct 35841183  T
Q  270 tggatcaaaatccggggcgttaca 293  Q
    |||| |||||| ||||| ||||||    
T  35841184 tggaccaaaattcggggagttaca 35841207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 4233108 - 4233140
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||||||||||| ||||||||||||||||||    
T  4233108 gtaatgtcttggatgaaaatccggggcgttaca 4233140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 63 - 293
Target Start/End: Complemental strand, 241003 - 240797
Alignment:
Q  63 gttttgcttgaagtgcgtacgggggacgaaattgggtttttgattgaattgtaactttagtagaaatttttgaaggatattagttcaagaattttaatta 162  Q
    ||||| ||||||| ||||| |||| |||||||||||||||| |||||||||||| ||||| || |||||| ||||||||||| || ||||||||||||||    
T  241003 gtttttcttgaagcgcgtatgggg-acgaaattgggttttt-attgaattgtaattttagaagtaatttt-gaaggatattaatttaagaattttaatta 240907  T
Q  163 aattatgttaagaattttgtataggctttgctaaaatatatattattgatgaaataaataaatagtagtgtttttcagaaaaggaaaatgatttaggcgt 262  Q
    |||||||||||||||||| |||                     |||||||||||||||||||||||||||||||||||| || ||||||||||||| |||    
T  240906 aattatgttaagaattttttat---------------------tattgatgaaataaataaatagtagtgtttttcagagaaagaaaatgatttagacgt 240828  T
Q  263 aatgtcttggatcaaaatccggggcgttaca 293  Q
    ||| |||||||||||||||| |||| |||||    
T  240827 aatatcttggatcaaaatccagggcattaca 240797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 32763 - 32581
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    ||||||||||||||||||||||| |||||||||| |||||  |||||| |||||||||||||| ||||  ||||||||||||  |||||| ||||||| |    
T  32763 aaggaaattgacccttacactaacattttaggtaccaaag--gagatggtctatgctttgaagttttttgttgaagtgcgtataggggac-aaattggat 32667  T
Q  100 ttttgattgaattgtaactttagtagaaatttttgaaggata-ttagttcaagaattttaattaaattatg-ttaagaattttgtat 184  Q
    |||| |||||||||||| |||||  | || |||||||||||| |||||| |||||||||| |||||||||| |||||||||||||||    
T  32666 ttttaattgaattgtaattttagatgtaa-ttttgaaggatatttagtttaagaattttagttaaattatgtttaagaattttgtat 32581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 975 - 1077
Alignment:
Q  1 aaggaaattgacccttacactaatattttaggtatcaaagaagagatgatctatgctttgaag-ttttgcttgaagtgcgtacgggggacgaaattgggt 99  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  975 aaggaaattgacccttacactaatattttaagtaccaaagaagagatggtccatgctttgaagttttttcttgaagtgtgtacgggggac-aaattgggt 1073  T
Q  100 tttt 103  Q
    ||||    
T  1074 tttt 1077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 186
Target Start/End: Original strand, 1118 - 1153
Alignment:
Q  151 gaattttaattaaattatgttaagaattttgtatag 186  Q
    ||||||||||||||||||||||||||||||||||||    
T  1118 gaattttaattaaattatgttaagaattttgtatag 1153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 356107 - 356044
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttacattatggtatcagagcaataatcctcggacaa 324  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  356107 gtaatgtcttggatgaaaatccggggcgttacattatggtatcagagcaatgatcctcggacaa 356044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 147556 - 147493
Alignment:
Q  262 taatgtcttggatcaaaatccggggcgttacattatggtatcagagcaataatcctcggacaaa 325  Q
    ||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  147556 taatgtcttggataaaaatccgggacgttacattatagtattagagcaataatcctcggacaaa 147493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 34918 - 34855
Alignment:
Q  262 taatgtcttggatcaaaatccggggcgttacattatggtatcagagcaataatcctcggacaaa 325  Q
    ||||||||||||| ||||||||| ||||||||| || |||| ||||||||||||||||||||||    
T  34918 taatgtcttggataaaaatccggagcgttacataatagtattagagcaataatcctcggacaaa 34855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 32252 - 32356
Alignment:
Q  175 aattttgtataggctttgctaaaatatatattattgatgaaataa-ataaatagtagtgtttttcagaaaaggaaaatgatttaggcgtaatgtcttgga 273  Q
    ||||||||||||| |||| ||| | || |||||||||||| | || | |||||||||||||||| | |||| |||||| ||||||||||||| |||| ||    
T  32252 aattttgtataggttttgttaaga-atttattattgatgataaaacaaaaatagtagtgtttttga-aaaatgaaaataatttaggcgtaatatcttcga 32349  T
Q  274 tcaaaat 280  Q
    |||||||    
T  32350 tcaaaat 32356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 5323 - 5355
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||||||||||| ||||||||||||||||||    
T  5323 gtaatgtcttggattaaaatccggggcgttaca 5355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 1877 - 1845
Alignment:
Q  261 gtaatgtcttggatcaaaatccggggcgttaca 293  Q
    |||||||||||||| ||||||||||||||||||    
T  1877 gtaatgtcttggatgaaaatccggggcgttaca 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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