View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11099_low_6 (Length: 410)
Name: NF11099_low_6
Description: NF11099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11099_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 6 - 400
Target Start/End: Complemental strand, 29071597 - 29071203
Alignment:
| Q |
6 |
atataatggcatcaacccttttggcatcaacagcaataatgctaagttctctaattgctgtgttaatgagtagtagaaatgaggggagaagtgttgtatc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29071597 |
atataatggcatcaacccttttggcatcaacagcaataatgctaagttctctaattgctgtgttaatgagtagtagaaatgagggaagaagtgttgtatc |
29071498 |
T |
|
| Q |
106 |
attagtggttggtgatagaactgagctagttttatcaatcaaatttttctccatattggtttgtttcatgttagctttcttgttaaatgttcaatctata |
205 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29071497 |
gttagtgtttggtgatagaactgagctagttttatcaatcaaatttttctccatattggtttgtttcatgttagctttcttgttgaatgttcaatctata |
29071398 |
T |
|
| Q |
206 |
aggtactatagtcatgcaagcattctcatcaatgttcctttcaagaaactgtcatcaaaccttagacaacagaagctgacagctgagtatgttgccaata |
305 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29071397 |
aggtactatagtcatgcaagcatactcatcaatgttcctttcaagaaactatcatcaaaccttagacaacagaagctgacagctgagtatgttgccaata |
29071298 |
T |
|
| Q |
306 |
cagttaaccgtggaagctatttctggtcacttggtttgcgtgcattttacttttccttccctctattcatgtggatctttggacctattcctatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29071297 |
cagttaaccgtggaagctatttctggtcacttggtttgcgtgcattttacttttccttccctcttttcatgtggatctttggacctattcctatg |
29071203 |
T |
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