View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1109_low_12 (Length: 314)

Name: NF1109_low_12
Description: NF1109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1109_low_12
NF1109_low_12
[»] chr4 (3 HSPs)
chr4 (92-287)||(55119390-55119585)
chr4 (141-179)||(21236377-21236415)
chr4 (205-254)||(35947825-35947874)
[»] chr8 (1 HSPs)
chr8 (201-254)||(26172728-26172781)
[»] chr5 (3 HSPs)
chr5 (211-250)||(36018032-36018071)
chr5 (198-247)||(14627504-14627553)
chr5 (205-249)||(41248422-41248466)
[»] chr1 (2 HSPs)
chr1 (215-254)||(38580839-38580878)
chr1 (125-177)||(15242631-15242683)
[»] chr3 (2 HSPs)
chr3 (216-254)||(10877097-10877135)
chr3 (125-169)||(3747890-3747934)
[»] chr7 (1 HSPs)
chr7 (218-254)||(13043516-13043552)
[»] chr2 (1 HSPs)
chr2 (199-250)||(36676987-36677039)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 92 - 287
Target Start/End: Original strand, 55119390 - 55119585
Alignment:
Q  92 taatcctcccatattagcggaaaagtgcataacaatccggagtttggctgtgaggtaaggatagtctcaccaagaattattccatccaaatcgaatcctg 191  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||| |||||| |||||||||||||| ||||    
T  55119390 taatcctcccatattaggggaaaagggcataacaatccggagtttggctgtgaggtaaggataatctgaacaaaaattataccatccaaatcgaaccctg 55119489  T
Q  192 ggttcctccaaataattcatctttggtgaaactcattaaccacttcaactcaattgcttggttgataaagagttgacttatcaagccgttgattca 287  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55119490 ggttcctccgaataattcatccttggtgaaactcattaaccacttcaactcaattgcttggttgataaagagttgacttatcaagccgttgattca 55119585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 21236377 - 21236415
Alignment:
Q  141 gtgaggtaaggatagtctcaccaagaattattccatcca 179  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  21236377 gtgaggtaagtatagtctgaccaagaattattccatcca 21236415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 35947825 - 35947874
Alignment:
Q  205 aattcatctttggtgaaactcattaaccacttcaactcaattgcttggtt 254  Q
    ||||||| |||||||||||||||||||||  | || ||||||||||||||    
T  35947825 aattcatttttggtgaaactcattaaccatctgaattcaattgcttggtt 35947874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 26172781 - 26172728
Alignment:
Q  201 aaataattcatctttggtgaaactcattaaccacttcaactcaattgcttggtt 254  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||    
T  26172781 aaataattcatcattgatgaaactcattaaccacttgaactcaattacttggtt 26172728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 36018032 - 36018071
Alignment:
Q  211 tctttggtgaaactcattaaccacttcaactcaattgctt 250  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  36018032 tctttggtcaaactcattaaccacttgaactcaattgctt 36018071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 14627553 - 14627504
Alignment:
Q  198 tccaaataattcatctttggtgaaactcattaaccacttcaactcaattg 247  Q
    |||||||||||  |||||| ||||||||||||| ||||| ||||||||||    
T  14627553 tccaaataattggtctttgatgaaactcattaatcacttgaactcaattg 14627504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 41248466 - 41248422
Alignment:
Q  205 aattcatctttggtgaaactcattaaccacttcaactcaattgct 249  Q
    ||||||||||| ||| |||||||||||||||| ||| ||||||||    
T  41248466 aattcatctttagtggaactcattaaccacttaaacacaattgct 41248422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 38580878 - 38580839
Alignment:
Q  215 tggtgaaactcattaaccacttcaactcaattgcttggtt 254  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  38580878 tggtgaaactcattaaccatttgaactcaattgcttggtt 38580839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 15242683 - 15242631
Alignment:
Q  125 aatccggagtttggctgtgaggtaaggatagtctcaccaagaattattccatc 177  Q
    ||||||||||| || ||||||||||| ||||||| ||| |||||| |||||||    
T  15242683 aatccggagttcggttgtgaggtaagaatagtctgacctagaattgttccatc 15242631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 10877135 - 10877097
Alignment:
Q  216 ggtgaaactcattaaccacttcaactcaattgcttggtt 254  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  10877135 ggtgaagctcattaaccacttgaactcaattgcttggtt 10877097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 3747934 - 3747890
Alignment:
Q  125 aatccggagtttggctgtgaggtaaggatagtctcaccaagaatt 169  Q
    ||||||||||||||| |||||| || |||||||| ||||||||||    
T  3747934 aatccggagtttggccgtgaggaaaagatagtctgaccaagaatt 3747890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 13043516 - 13043552
Alignment:
Q  218 tgaaactcattaaccacttcaactcaattgcttggtt 254  Q
    ||||||||||||||||||| | |||||||||||||||    
T  13043516 tgaaactcattaaccacttgagctcaattgcttggtt 13043552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 36676987 - 36677039
Alignment:
Q  199 ccaaataattcatc-tttggtgaaactcattaaccacttcaactcaattgctt 250  Q
    |||||||||||||| ||| || ||||||||||||||||| | |||||||||||    
T  36676987 ccaaataattcatcatttagtaaaactcattaaccacttgagctcaattgctt 36677039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University