View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1109_low_14 (Length: 297)
Name: NF1109_low_14
Description: NF1109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1109_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 68 - 245
Target Start/End: Original strand, 33585254 - 33585431
Alignment:
| Q |
68 |
gtttcttcttaaaagaagatagtagaaagtttgggatactatatatttagcagctgcaagtagcatatatgacaaaaggccacagtactatgttgtcctt |
167 |
Q |
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| T |
33585254 |
gtttcttcttaaaagaagatagtagaaagtttgggatactatatatttagcagctgcaagtagcatatatgacaaaaggcctcagtactatgttgtcctt |
33585353 |
T |
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| Q |
168 |
accttacccactgtctcattggcctacttttactaaacaggttcattttgtgtaggggggaatattaacacctcttat |
245 |
Q |
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|||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33585354 |
accttagccactgtctgattggcctacttttactcaacaggttcattttgtgtaggggggaatattaacacctcttat |
33585431 |
T |
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