View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1109_low_19 (Length: 260)
Name: NF1109_low_19
Description: NF1109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1109_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9132067 - 9132297
Alignment:
| Q |
1 |
tataatattttcttacaaattaataacgttggcatgaaattatttatccttgannnnnnnaagcaaaacaacaacaacaaaaattgtcaagtagatttat |
100 |
Q |
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| T |
9132067 |
tataatattttcttacaaattaataacattggcatgaaattatt-atccttgatttttttaagcaaaacaacaacaacaaaaattgtcaagtagatttat |
9132165 |
T |
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| Q |
101 |
attcacacattttacgtttccagaggtgaagaatttgatgttccaacctagtcattgtaannnnnnnnnnnnnnnnggatgaaaatagaattactattaa |
200 |
Q |
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| T |
9132166 |
attcacacattttacgttttcagaggtgaagaatttgatgttccaacctagtcattgtaattttatttttatttttggatgaaaatagaattactattaa |
9132265 |
T |
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| Q |
201 |
cgaaaaattagctactcatatatcttttttgt |
232 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
9132266 |
cgaaaaattagctactcatatatattttttgt |
9132297 |
T |
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