View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1109_low_2 (Length: 489)

Name: NF1109_low_2
Description: NF1109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1109_low_2
NF1109_low_2
[»] chr5 (3 HSPs)
chr5 (19-180)||(38558947-38559110)
chr5 (136-176)||(6695792-6695832)
chr5 (136-180)||(6697372-6697416)
[»] chr8 (4 HSPs)
chr8 (11-180)||(40600534-40600704)
chr8 (139-180)||(14706279-14706320)
chr8 (118-167)||(16910287-16910336)
chr8 (118-174)||(27244277-27244333)
[»] chr3 (13 HSPs)
chr3 (43-180)||(53343106-53343244)
chr3 (229-424)||(24733881-24734080)
chr3 (44-180)||(52717623-52717760)
chr3 (367-459)||(24677072-24677164)
chr3 (44-180)||(32558219-32558357)
chr3 (367-452)||(24634451-24634536)
chr3 (47-117)||(7050462-7050533)
chr3 (136-180)||(45781551-45781595)
chr3 (137-180)||(7050983-7051026)
chr3 (367-461)||(24656546-24656640)
chr3 (380-461)||(24672919-24673000)
chr3 (136-180)||(25694865-25694909)
chr3 (136-180)||(52717123-52717167)
[»] chr1 (2 HSPs)
chr1 (44-180)||(8641811-8641948)
chr1 (86-180)||(45500661-45500758)
[»] chr4 (1 HSPs)
chr4 (90-179)||(21838206-21838295)
[»] chr7 (1 HSPs)
chr7 (88-180)||(22297851-22297943)
[»] chr6 (1 HSPs)
chr6 (125-175)||(14050191-14050241)
[»] chr2 (4 HSPs)
chr2 (136-180)||(1522396-1522440)
chr2 (86-174)||(10174650-10174738)
chr2 (136-180)||(1521650-1521694)
chr2 (86-174)||(6850289-6850377)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 38559110 - 38558947
Alignment:
Q  19 caaacgtgagaaagatgaggctgataacaaggatagtgtgcaaaaatatactt-gtgttctcacttt-gtctctaacacatctaaacctttaatttaaat 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  38559110 caaacgtgagaaagatgaggctgacaacaaggatagtgtgcaaaaatatactttgtgttctcacttttgtctctaacacatctaaacctttaatttaaat 38559011  T
Q  117 ctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  38559010 ctgatggtgtataaaggtggtccaccgatgaaccacttatttaatggttcatcctagaatccac 38558947  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 6695832 - 6695792
Alignment:
Q  136 gtccaccgatgaaccatttatttgatggttcatcctagaat 176  Q
    |||||||| ||||||| ||||||||||||||| ||||||||    
T  6695832 gtccaccggtgaaccacttatttgatggttcaccctagaat 6695792  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 6697372 - 6697416
Alignment:
Q  136 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||| ||| ||||||| ||||||||||||||| ||||||||||||    
T  6697372 gtccgccggtgaaccacttatttgatggttcaccctagaatccac 6697416  T

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Target: chr8 (Bit Score: 131; Significance: 9e-68; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 40600534 - 40600704
Alignment:
Q  11 cacagagtcaaacgtgagaaagatgaggctgataacaaggatagtgtgcaaaaatatacttgtgttctcacttt-gtctctaacacatctaaacctttaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  40600534 cacagagtcaaacgtgagaaagatgaggctgataacaaggatattgtgcaaaaatatatttgtgttctcacttttgtctctaacacgtctaaacctttaa 40600633  T
Q  110 tttaaatctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    ||||||| ||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |||||||    
T  40600634 tttaaatttgatggtgtataaagatggtccaccgatgaaccacttatttgatggttcatcctaaaatccac 40600704  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 14706320 - 14706279
Alignment:
Q  139 caccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    ||||||||||| |||| |||||||||||| ||||||||||||    
T  14706320 caccgatgaactatttgtttgatggttcaccctagaatccac 14706279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 16910336 - 16910287
Alignment:
Q  118 tgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttca 167  Q
    ||||||| || |||||| |||||||||||||||| ||| |||||||||||    
T  16910336 tgatggtatacaaaggtggtccaccgatgaaccacttagttgatggttca 16910287  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 27244277 - 27244333
Alignment:
Q  118 tgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctaga 174  Q
    ||||||| |||||| || |||||||| ||||| ||||| ||||||||||| ||||||    
T  27244277 tgatggtatataaaagtggtccaccggtgaactatttaattgatggttcaccctaga 27244333  T

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Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 43 - 180
Target Start/End: Complemental strand, 53343244 - 53343106
Alignment:
Q  43 taacaaggatagtgtgcaaaaatatacttgtgttctcacttt-gtctctaacacatctaaacctttaatttaaatctgatggtgtataaaggtagtccac 141  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  53343244 taacaaggatagtgtgcaaaaatatacttgtgttctcacttttgtctctaacacatttaaacctttaatttaaatctgatggtgtataaaggtggtccac 53343145  T
Q  142 cgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  53343144 cgatgaaccacttatttgatggttcatcctagaatccac 53343106  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 229 - 424
Target Start/End: Complemental strand, 24734080 - 24733881
Alignment:
Q  229 taaagcatcacagttttgttcgaaagtttcacaacacttcctacgtcacatattttccatcagnnnnnnnnnnt-ctatttatggacaac-tctttannn 326  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||            ||||||||||||||| |||||        
T  24734080 taaagcatcacagttttgttcgaaagttggacaacactttctacgtcacatattttccatcagaaaaaaaaaaaactatttatggacaacctcttttatt 24733981  T
Q  327 nnnnnn--caaaactcattctccaatcacaggatcaagggaaacacaaaatgagtatgcataaagcttatacaattctgatgagcatggaattggcttcg 424  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24733980 ttttttttcaaaactcattctccaatcacaggatcaagggaaacacaaaatgagtatgcataaagcttatacaattctgatgagcatggaattggcttcg 24733881  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 52717623 - 52717760
Alignment:
Q  44 aacaaggatagtgtgcaaaaatatacttgtgttctcactttgtc-tctaacacatctaaacctttaatttaaatctgatggtgtataaaggtagtccacc 142  Q
    ||||||||||||||||| || |||||||||||||||| ||| |  ||||||||||||||||||||||||||||||  |||||||| ||| || ||||| |    
T  52717623 aacaaggatagtgtgcagaagtatacttgtgttctcatttttttgtctaacacatctaaacctttaatttaaatcgaatggtgtacaaaagtggtccatc 52717722  T
Q  143 gatgaaccatttatttgatggttcatcctagaatccac 180  Q
     |||||||||||| ||||||||||| ||||||||||||    
T  52717723 catgaaccatttagttgatggttcaccctagaatccac 52717760  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 459
Target Start/End: Complemental strand, 24677164 - 24677072
Alignment:
Q  367 acacaaaatgagtatgcataaagcttatacaattctgatgagcatggaattggcttcgattggaattaagtatcaaggatcaaatacaaaccc 459  Q
    |||||||||||||||||||||||||||||| |||||||| ||| |||| |||||||| ||||| ||||||| |||||| ||||| || |||||    
T  24677164 acacaaaatgagtatgcataaagcttatactattctgatcagcttggagttggcttccattggtattaagtgtcaaggttcaaacaccaaccc 24677072  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 32558357 - 32558219
Alignment:
Q  44 aacaaggatagtgtgcaaaaatatacttgtgttctcactttgtct--ctaacacatctaaacctttaatttaaatctgatggtgtataaaggtagtccac 141  Q
    ||||||||||||||||| || ||||||| |||||||| ||| | |  |||||| ||||||||||||||||||||||  |||||||| ||| ||  |||      
T  32558357 aacaaggatagtgtgcagaagtatacttatgttctcattttttttgtctaacatatctaaacctttaatttaaatcgaatggtgtacaaaagtgatccgt 32558258  T
Q  142 cgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    || ||||||| ||| ||||||||||| ||||||||||||    
T  32558257 cggtgaaccacttagttgatggttcaccctagaatccac 32558219  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 452
Target Start/End: Complemental strand, 24634536 - 24634451
Alignment:
Q  367 acacaaaatgagtatgcataaagcttatacaattctgatgagcatggaattggcttcgattggaattaagtatcaaggatcaaata 452  Q
    ||||||||||||||| |||||||| ||||| |||||||||||  |||| |||| ||| |||||||||| ||||||||| |||||||    
T  24634536 acacaaaatgagtatccataaagcatatactattctgatgagtttggagttgggttcaattggaattatgtatcaaggttcaaata 24634451  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 7050533 - 7050462
Alignment:
Q  47 aaggatagtgtgcaaaaatatacttgtgttctcactttgtc-tctaacacatctaaacctttaatttaaatc 117  Q
    |||||||||||||| || |||||||||||||||| ||| |  ||||||||||||||||||||||||||||||    
T  7050533 aaggatagtgtgcagaagtatacttgtgttctcatttttttgtctaacacatctaaacctttaatttaaatc 7050462  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 45781595 - 45781551
Alignment:
Q  136 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||||||| |||||||||| |||||||||||| ||||||||||||    
T  45781595 gtccaccggtgaaccatttgtttgatggttcaccctagaatccac 45781551  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 7050983 - 7051026
Alignment:
Q  137 tccaccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||||||||||| || ||||||||||||||| ||||||||||||    
T  7050983 tccaccgatgaatcacttatttgatggttcaccctagaatccac 7051026  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 461
Target Start/End: Complemental strand, 24656640 - 24656546
Alignment:
Q  367 acacaaaatgagtatgcataaagcttatacaattctgatgagcatggaattggcttcgattggaattaagtatcaaggatcaaatacaaacccct 461  Q
    |||||||||||||||||||||||| ||||| ||||| |||| | | || |||| ||| |||||| | ||||| ||||| | ||| || |||||||    
T  24656640 acacaaaatgagtatgcataaagcatatactattcttatgaccttagagttgggttcaattggagtaaagtaccaaggtttaaacaccaacccct 24656546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 461
Target Start/End: Complemental strand, 24673000 - 24672919
Alignment:
Q  380 atgcataaagcttatacaattctgatgagcatggaattggcttcgattggaattaagtatcaaggatcaaatacaaacccct 461  Q
    ||||||||||| ||||| ||||| |||| | | || || ||||| |||||||||||||||||||| | ||| || |||||||    
T  24673000 atgcataaagcatatactattcttatgaccttagagttagcttcaattggaattaagtatcaaggtttaaacaccaacccct 24672919  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 25694865 - 25694909
Alignment:
Q  136 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||||||||||||||| |||| ||||||||||  |||||||||||    
T  25694865 gtccaccgatgaaccacttatatgatggttcactctagaatccac 25694909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 52717167 - 52717123
Alignment:
Q  136 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||||||| |||| || ||||||||||||||| ||||||||||||    
T  52717167 gtccaccggtgaatcagttatttgatggttcaccctagaatccac 52717123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 8641811 - 8641948
Alignment:
Q  44 aacaaggatagtgtgcaaaaatatacttgtgttctcactttgtc-tctaacacatctaaacctttaatttaaatctgatggtgtataaaggtagtccacc 142  Q
    |||||||||||||| |  || |||||||||||||||| ||| |  ||||||||||||||||||||||||||||||  |||||||| ||| || ||||| |    
T  8641811 aacaaggatagtgtcctgaagtatacttgtgttctcatttttttgtctaacacatctaaacctttaatttaaatcaaatggtgtacaaaagtggtccatc 8641910  T
Q  143 gatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |   ||||| ||| ||||||||||| ||||||||||||    
T  8641911 ggaaaaccacttagttgatggttcaccctagaatccac 8641948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 45500661 - 45500758
Alignment:
Q  86 tctctaacacatctaaacctttaatttaaatctgatggtgtataaaggtagtc---caccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||||||||||| ||||| ||||||||||||| |||| |||||||| || |||   || |  ||||||| ||||||||||||||| |||| |||||||    
T  45500661 tctctaacacatttaaacttttaatttaaatcggatgatgtataaaagtggtccatcatcagtgaaccacttatttgatggttcaacctaaaatccac 45500758  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 21838206 - 21838295
Alignment:
Q  90 taacacatctaaacctttaatttaaatct-gatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatcca 179  Q
    |||| ||||||||||||||| | | |||| |||||| |||||| || |||||||||||||||| ||| |||||||||||||||||||||||    
T  21838206 taactcatctaaacctttaaat-atatcttgatggtatataaaagtggtccaccgatgaaccacttaattgatggttcatcctagaatcca 21838295  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 22297851 - 22297943
Alignment:
Q  88 tctaacacatctaaacctttaatttaaatct-gatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||||| ||||||||||||||| | | |||| |||||| |||||| || |||||||||||||||| ||| |||||||||||  |||||||||||    
T  22297851 tctaactcatctaaacctttaaat-atatcttgatggtatataaaagtggtccaccgatgaaccacttaattgatggttcactctagaatccac 22297943  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 14050241 - 14050191
Alignment:
Q  125 gtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaa 175  Q
    ||||||| ||||| ||||||||||||| || ||||||||||||||||||||    
T  14050241 gtataaaagtagttcaccgatgaaccacttgtttgatggttcatcctagaa 14050191  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 1522396 - 1522440
Alignment:
Q  136 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||||||| ||||||| || |||||||||||||||||||||||||    
T  1522396 gtccaccggtgaaccacttgtttgatggttcatcctagaatccac 1522440  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 10174650 - 10174738
Alignment:
Q  86 tctctaacacatctaaacctttaatttaaatctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctaga 174  Q
    |||||||| |||| |||||||| |  | ||||||| |||  ||||| || |||||||| ||||||||||| ||||||||||| ||||||    
T  10174650 tctctaactcatccaaaccttttaaattaatctgacggtaaataaaagtggtccaccggtgaaccatttagttgatggttcaccctaga 10174738  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 1521694 - 1521650
Alignment:
Q  136 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 180  Q
    |||||||| ||||||| || |||||||||||| ||||||||||||    
T  1521694 gtccaccggtgaaccacttgtttgatggttcaccctagaatccac 1521650  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 6850377 - 6850289
Alignment:
Q  86 tctctaacacatctaaacctttaatttaaatctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctaga 174  Q
    |||||||| |||| |||||||| |  | ||||||| |||  ||||| || |||||||||||||||| |||||| ||| |||| ||||||    
T  6850377 tctctaactcatccaaaccttttaaattaatctgacggtaaataaaagtggtccaccgatgaaccacttattttatgcttcaccctaga 6850289  T

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