View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1109_low_20 (Length: 253)
Name: NF1109_low_20
Description: NF1109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1109_low_20 |
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| [»] scaffold0199 (2 HSPs) |
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Alignment Details
Target: scaffold0199 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 10224 - 10308
Alignment:
| Q |
114 |
caatagaacaatagcacttctaaaccaatgaagtaaaaacccaccctcattattatagatataatctaaatatacacatcaaaac |
198 |
Q |
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| T |
10224 |
caatagaacaacagcacttctaaaccaatgaagtaaaaacccaccctcgttattatagatataatctaaatatacacatcaaaac |
10308 |
T |
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Target: scaffold0199; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 10110 - 10204
Alignment:
| Q |
1 |
taacatatcttagaactcccgtannnnnnnnncctcaaaagcaaaagggattttaatttaaatattgtaggtctcatctcaatagaacaatagccgtttc |
100 |
Q |
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| T |
10110 |
taacatattttagaactcccgtatttttttttcctcaaaaacaaaagggattttaatttaaatactgtagg-----tctcaatagaacaatagccgtttc |
10204 |
T |
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