View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1109_low_3 (Length: 472)
Name: NF1109_low_3
Description: NF1109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1109_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 52 - 470
Target Start/End: Original strand, 55598475 - 55598892
Alignment:
| Q |
52 |
cacttcaacaagcattaataatcaacaattaaagagagaaaagaaagctagacttacagcagtcacaggaatctcatgaatgtcaaaccatgaaggcatt |
151 |
Q |
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| T |
55598475 |
cacttctacaagtaataataatcaacaattaaagagagaaaagaaagctagacttacagcagtcacgggaatctcatgaatgtcaaaccatgaaggcatt |
55598574 |
T |
|
| Q |
152 |
acagaaccatctacaaagaataaacaaaatcaaaataatatcattttctaaagtcaggaagcttattgcacgccgaatagattgcccataaatggcatct |
251 |
Q |
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| T |
55598575 |
acagaaccatctacaaagaataaacaaaatcaaaataatatcattttctaaagtcaggaagcttattgcacgccgaatagattgcccataaatggcatct |
55598674 |
T |
|
| Q |
252 |
caagtgatgttaatatctcatttgtaatttggttaccaagcagaaaactcaagtatagacataggtggaataggaggacagatcatatattaataggaag |
351 |
Q |
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| T |
55598675 |
caagtgatgttaatatctcatttgtaatttggttaccaagcagaaaactcaagtatagacataggtggaataggaggacagatcatatattaataggaag |
55598774 |
T |
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| Q |
352 |
catttttagcataaataaaaaccaactaccaaggaccatcactcagaatcagaaattgttttaaagatgcctaattagtaccatgagcatgtgtgtggta |
451 |
Q |
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| T |
55598775 |
catttttagcataaat-aaaaccaactaccaaggaccatcactcagaatcagaaattgttttaaagatgcctaattagtaccatgagcatgtgtgtggta |
55598873 |
T |
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| Q |
452 |
cgctaaggatgactctggt |
470 |
Q |
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| T |
55598874 |
cgctaaggatgagtctggt |
55598892 |
T |
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