View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1109_low_5 (Length: 463)
Name: NF1109_low_5
Description: NF1109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1109_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 31 - 457
Target Start/End: Original strand, 41299302 - 41299743
Alignment:
| Q |
31 |
attcattctccaaaggctctcaacatcaaacaagttcattggcattctcctataatttcttggacaaaatgcaatattg-----gcagctagaggttttt |
125 |
Q |
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| T |
41299302 |
attcattctccaaaggctctcaacatcaaacaggttcattggcattctcctataatttcttggacaaaatgcaatattgacaaggcagctagaggttttt |
41299401 |
T |
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| Q |
126 |
cttgtccttctgcttgcgagggtatcattagggatcaccatgcaaatcttt----------tcctgtcaacattggtaataatacttcctttaatgttga |
215 |
Q |
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| T |
41299402 |
ctggtccttctgcttgcgagggtatcattagggatcaccatgcaaatgtttatggttgttttcctgtcaacattggtaataatacttcctttaatgttga |
41299501 |
T |
|
| Q |
216 |
gttaattggatctatgac-ggccattgaaactgctttcnnnnnnngttgatcactctctggttggataccgactctcaattgacaactttagctttcaan |
314 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
41299502 |
gttaattggatctatgacgggccattgaaactgctttcaaaaaaagttgatcactctctggttggatactgactctcaattgacaacattagctttcaat |
41299601 |
T |
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| Q |
315 |
nnnnnngatattgttccatatcaccttagaatttaaaaacaaatggttaatttgcatagacatcaccacaaatatacnnnnnnngttctcacattcatcg |
414 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
41299602 |
ttttttgatattgttccttatcaccttagaatttaaaaacaaatggttaatttgcatag-catcaccacaaatatacaaaaaaagttctcacattcatcg |
41299700 |
T |
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| Q |
415 |
tgagggtaatcttatattagattagattgcttccctttgtttc |
457 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41299701 |
tgagggtaatcttatattagattagattgcttccctgtgtttc |
41299743 |
T |
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