View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1109_low_6 (Length: 452)
Name: NF1109_low_6
Description: NF1109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1109_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Original strand, 8807068 - 8807432
Alignment:
| Q |
15 |
cttagcacaaatctccttagaaaagttcctaggaataccaaattccaattttacccctcttttacctgaataagaccctctcaaaacagcccaactagaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8807068 |
cttagcacaaatctccttagaaaagttcctaggaataccaaattccaattttacccctcttttacctgaataagaccctctcaaaacagcccaactagaa |
8807167 |
T |
|
| Q |
115 |
aatcccctacatccaaattgtgaaaaaacagaaaacccttcaccaatatgccatatactatgatcagaaagtggataacaacatccaagagaaccaccac |
214 |
Q |
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| T |
8807168 |
aatcccctacatccaaattgtgaaaaaacagaaaacccttcaccaatatgccatatactatgatcagaaagtggataacaacatccaagagaaccaccac |
8807267 |
T |
|
| Q |
215 |
caacacttccatcacaaccaggaaggttaactgtttcacaatctgctttacaaagtgaagaatcttcacaatcatacagaccaacaacattatcaactga |
314 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8807268 |
caacacttccatcacaaccaggaagattaactgtttcacaatctgctttacaaagtgaagaatcttcacaatcatacagaccaacaacattatcaactga |
8807367 |
T |
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| Q |
315 |
tacaccaaagtagtttcttccatcaaaactcctctcaccaaatgaattcaaatcgttgtactgtc |
379 |
Q |
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| T |
8807368 |
tacaccaaagtagtttcttccatcaaaactcctctcaccaaatgaattcaaatcgttgtactgtc |
8807432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 215 - 374
Target Start/End: Original strand, 22923667 - 22923828
Alignment:
| Q |
215 |
caacacttccatcacaaccaggaaggttaactgtttcacaatctgctttacaaagtgaagaatcttcacaatcatacagaccaacaacattatcaactga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||| |||||| |||||||||| | |
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| T |
22923667 |
caacacttccatcacaaccaggaaggttaactgtttcgcaatttgctttacaaagtgaagaaccttcacaatcacagagagcaacaaaattatcaactaa |
22923766 |
T |
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| Q |
315 |
tacaccaaa--gtagtttcttccatcaaaactcctctcaccaaatgaattcaaatcgttgta |
374 |
Q |
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|||||||| | ||| || |||||||||||||||| ||||| |||||||||||||||| |
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| T |
22923767 |
gacaccaaattgatttttttttcatcaaaactcctctcttcaaataaattcaaatcgttgta |
22923828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 22920223 - 22920395
Alignment:
| Q |
15 |
cttagcacaaatctccttagaaaagttcctaggaataccaaattccaattttacccctcttttacctgaataagaccctctcaaaacagcccaactagaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||||| |||||||||||| || ||||| || |
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| T |
22920223 |
cttagcacaaatctccttagaaaagttcataggaatacaaatttccaattttact-----------tgaataagaacctctcaaaacaaccaaactaaaa |
22920311 |
T |
|
| Q |
115 |
aatcccctacatccaaattgtgaaaaaacagaaaacccttcaccaatatgccatatactatgatcagaaagtggataacaacat |
198 |
Q |
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|||||||| ||||||| || ||||||| |||||||||||||| || |||||||||| ||| |||||||||||||||||||||| |
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| T |
22920312 |
aatcccctgtatccaaactgagaaaaaatagaaaacccttcacaaacatgccatatattattatcagaaagtggataacaacat |
22920395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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