View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1109_low_7 (Length: 355)
Name: NF1109_low_7
Description: NF1109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1109_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 13685264 - 13685395
Alignment:
| Q |
26 |
taacttaactctaaaattgacttgtaagataaatattgtcgtcacttataaaaacactaacatt-ttttcattttatactcgatatccgctctaaagaac |
124 |
Q |
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| T |
13685264 |
taacttaactctaaaattgacttgtaagataaatattgtcgtcacttataaaaacactaacattgttttcattttatattggatatccgctccaaagaac |
13685363 |
T |
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| Q |
125 |
agactactctgtataccaatcccaccgacgcc |
156 |
Q |
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|||||||| |||||||||||||||| |||||| |
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| T |
13685364 |
agactactatgtataccaatcccactgacgcc |
13685395 |
T |
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Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 259 - 355
Target Start/End: Original strand, 13685937 - 13686033
Alignment:
| Q |
259 |
ataatgatgctcttaggatccaaacctacaccaccaagccaactcctggcggtgacattaagactcttaacacacaacaattggtttgtaatgtccc |
355 |
Q |
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| T |
13685937 |
ataatgatgctcttaggatccaaacatacaccatcaagccaactcctggcggtgacattaagactcttaacacacaacaattggtttgtaatgtccc |
13686033 |
T |
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