View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1109_low_9 (Length: 334)
Name: NF1109_low_9
Description: NF1109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1109_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 113 - 306
Target Start/End: Complemental strand, 50893890 - 50893701
Alignment:
| Q |
113 |
ctcaagatggcacagtagacattcacaatttatgtggcttgtttaccgttttctcgaaacagaaagaaagaagaagaaatagtgaaataggcagatattc |
212 |
Q |
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| T |
50893890 |
ctcaagatggcacagtagacattcacattttatgtggcttgtttaccgttttctcgaaacagaaagaaagaagaagaaatcgtgaaataggcacatattc |
50893791 |
T |
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| Q |
213 |
tgagagagacatgtcaccgtcgtttgcttgctcacgcaaaatgcaccggcgtcctcgacgccatcccactccccattctgttgttttccccttc |
306 |
Q |
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| T |
50893790 |
t----gagacatgtcaccgtcgtttgcctgctcacgcaaaatgcaccggcgtcctcgacgccatcccactccccattctgttgttttccccttc |
50893701 |
T |
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