View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11100_high_3 (Length: 435)

Name: NF11100_high_3
Description: NF11100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11100_high_3
NF11100_high_3
[»] chr5 (2 HSPs)
chr5 (17-430)||(9603130-9603538)
chr5 (92-153)||(9589103-9589164)
[»] chr8 (6 HSPs)
chr8 (17-194)||(6457888-6458065)
chr8 (17-194)||(6451798-6451975)
chr8 (289-364)||(6452071-6452146)
chr8 (383-430)||(6364468-6364515)
chr8 (291-358)||(6458166-6458233)
chr8 (392-430)||(6264935-6264973)
[»] chr2 (4 HSPs)
chr2 (94-161)||(42687709-42687776)
chr2 (17-163)||(42693980-42694126)
chr2 (313-363)||(42687290-42687340)
chr2 (392-430)||(42694396-42694434)
[»] chr3 (3 HSPs)
chr3 (381-421)||(35706521-35706561)
chr3 (381-415)||(35722349-35722383)
chr3 (381-417)||(35728277-35728313)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 9603538 - 9603130
Alignment:
Q  17 agctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaacacatcttgagacaatgattttattccatatgtaaggaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603538 agctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaacacatcttgagacaatgattttattccatatgtaaggaa 9603439  T
Q  117 gtcagatgacttcaagtgtccaaaattttcatctcttggaacatacatcacacctggtctctcacttttaggatctgtcaacaataaaatatcattagaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603438 gtcagatgacttcaagtgtccaaaattttcatctcttggaacatacatcacacctggtctctcacttttaggatctgtcaacaataaaatatcattagaa 9603339  T
Q  217 ccgcattattgtctctcatatttagtctttaaagtatatgaaannnnnnnnnnnnnnnnnntttaccctttttagttggttttcgaccacttctaaccct 316  Q
    |||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||    
T  9603338 ccgcattattgtctctcatatttagtctttaaagtatatgaaa-----attaatatttttttttaccctttttagttggttttcgaccacttctaaccct 9603244  T
Q  317 tcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaagcttgacatcttcatctggatcaccaagatcattgtagacatcataatcataa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603243 tcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaagcttgacatcttcatctggatcaccaagatcattgtagacatcataatcataa 9603144  T
Q  417 actctttcccattc 430  Q
    ||||||||||||||    
T  9603143 actctttcccattc 9603130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 9589164 - 9589103
Alignment:
Q  92 atgattttattccatatgtaaggaagtcagatgacttcaagtgtccaaaattttcatctctt 153  Q
    ||||||||| ||| |||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  9589164 atgattttaatccgtatgtaaggaagtctgatgactttaagtgaccaaaattttcatctctt 9589103  T

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Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 6457888 - 6458065
Alignment:
Q  17 agctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaacacatcttgagacaatgattttattccatatgtaaggaa 116  Q
    ||||||| ||||||||||| |||||||| |  ||||| || |||||||||||||| ||||  |||| |||||||| |||||||||||||||  |||||||    
T  6457888 agctatcgaactcatttggtgtgaaattgaggtcaaaaatcacagatttaaacaatggtatgacattttgagacagtgattttattccatacataaggaa 6457987  T
Q  117 gtcagatgacttcaagtgtccaaaattttcatctcttggaacatacatcacacctggtctctcacttttaggatctgt 194  Q
    ||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||| |||||||||||    
T  6457988 gtctgatgacttcaagtgaccaaaattttcatctcttggaacataaatcacacccggtttctcactcttaggatctgt 6458065  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 6451798 - 6451975
Alignment:
Q  17 agctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaacacatcttgagacaatgattttattccatatgtaaggaa 116  Q
    |||||||||||||||| || |||||||||| |||||| ||||||||||  |||||||| || || ||||| |||||||| |||||||||||  |||| ||    
T  6451798 agctatcaaactcattcggggtgaaattcagatcaaaaattacagattgtaacaaaggcaaaacgtcttgtgacaatgactttattccatacataagaaa 6451897  T
Q  117 gtcagatgacttcaagtgtccaaaattttcatctcttggaacatacatcacacctggtctctcacttttaggatctgt 194  Q
    ||| |||||||||||||| |||||||||||||||||||||||||| ||  |||| ||| ||||||| ||| |||||||    
T  6451898 gtctgatgacttcaagtgaccaaaattttcatctcttggaacataaatggcaccaggtttctcactcttaagatctgt 6451975  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 6452071 - 6452146
Alignment:
Q  289 tagttggttttcgaccacttctaacccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaag 364  Q
    |||||||||||| |||| |||||||||| |||||||| ||||| |||||||| ||||||||||  |||||| ||||    
T  6452071 tagttggttttctaccagttctaaccctacgagggtagggatgggtgctagatcctccaaggattggacgaacaag 6452146  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 430
Target Start/End: Original strand, 6364468 - 6364515
Alignment:
Q  383 atcaccaagatcattgtagacatcataatcataaactctttcccattc 430  Q
    |||||| | |||||||||||||||||||||||| | ||||||||||||    
T  6364468 atcacccaaatcattgtagacatcataatcatatattctttcccattc 6364515  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 6458166 - 6458233
Alignment:
Q  291 gttggttttcgaccacttctaacccttcgagggtaaggatgagtgctagaccctccaaggaccggacg 358  Q
    |||||||||| ||||||||||||||| |||||||| ||||  ||||| || || |||||||| |||||    
T  6458166 gttggttttctaccacttctaaccctgcgagggtagggataggtgcttgatcccccaaggacaggacg 6458233  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 6264935 - 6264973
Alignment:
Q  392 atcattgtagacatcataatcataaactctttcccattc 430  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  6264935 atcattgtaaacatcataatcataaactctgtcccattc 6264973  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 42687776 - 42687709
Alignment:
Q  94 gattttattccatatgtaaggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacata 161  Q
    ||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||||||||    
T  42687776 gattttattccatatgtgagaaagtctgaggacttcaagtgaccaaaattttcatctcttggaacata 42687709  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 42693980 - 42694126
Alignment:
Q  17 agctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaacacatcttgagacaatgattttattccatatgtaaggaa 116  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| |  ||   ||| | ||||| |||||| | || ||| | |||||| ||||| ||    
T  42693980 agctatcaaactcatttggtgtgaaatttaaatcaaagattacagactctaatgcagggaccacattttgagatactgctttcagtccataagtaagaaa 42694079  T
Q  117 gtcagatgacttcaagtgtccaaaattttcatctcttggaacataca 163  Q
     || ||||| |||||||| ||||||  |||||||||||||| |||||    
T  42694080 atctgatgatttcaagtgaccaaaagcttcatctcttggaagataca 42694126  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 42687340 - 42687290
Alignment:
Q  313 cccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaa 363  Q
    |||| |||||||||||||| ||||||||||||||||| || || |||||||    
T  42687340 ccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaa 42687290  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 42694396 - 42694434
Alignment:
Q  392 atcattgtagacatcataatcataaactctttcccattc 430  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  42694396 atcattgtagacatcataatcatagattctttcccattc 42694434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 35706561 - 35706521
Alignment:
Q  381 ggatcaccaagatcattgtagacatcataatcataaactct 421  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  35706561 ggatctccaagatcattgtagacatcatagtcataaactct 35706521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Complemental strand, 35722383 - 35722349
Alignment:
Q  381 ggatcaccaagatcattgtagacatcataatcata 415  Q
    ||||| |||||||||||||||||||||||||||||    
T  35722383 ggatctccaagatcattgtagacatcataatcata 35722349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 35728277 - 35728313
Alignment:
Q  381 ggatcaccaagatcattgtagacatcataatcataaa 417  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  35728277 ggatctccaagatcattgtagacatcatagtcataaa 35728313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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