View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11100_high_4 (Length: 425)
Name: NF11100_high_4
Description: NF11100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11100_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 5 - 410
Target Start/End: Complemental strand, 42742291 - 42741868
Alignment:
| Q |
5 |
caagagtaggttttgcatttagttattcgcaaaatagtcctcatgatagaataa------------------gagttgaacaatataaatggcggcaact |
86 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42742291 |
caagagtaggttttgcatttagtaattcgcaaaatagtcctcatgatagaataacagtaccaatgaaaataagagttgaacaatataaatggcggcaact |
42742192 |
T |
|
| Q |
87 |
acatataaacttagaatctagtaataaatgtagtcatccatgctaaggagacagcaacaatcaagtattaacgacttcataatgttctatcaactttagt |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42742191 |
acatataaacttagaatctagtaataaatgtagtcatccatgctaaggagacagcaacaatcaagtattaacgacttcataatgttctatcaactttagt |
42742092 |
T |
|
| Q |
187 |
tttagtagaactattcaaatatcaattggatctttctattcaaaggaaacgttagtcttaaattaataaccccatacaaattcattaaaattaggcataa |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
42742091 |
tttagtagaactattcaaatatcaattggatctttctatttaaaggaaacgttagtcttaaattaataaccccgtacaaattcattaaaattacgcataa |
42741992 |
T |
|
| Q |
287 |
gtggcttcgatagatgataaacccctagatctaaagtagttcgagcaaccattctagtggtggctttgatggaagacatttcaacaacagacggatgacg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741991 |
gtggcttcgatagatgataaacccctagatctaaagtagttcgagcaaccattctagtggtggctttgatggaagacatttcaacaacagacggatgacg |
42741892 |
T |
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| Q |
387 |
tctcattgtcattttagatgtaaa |
410 |
Q |
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|||||||||||||||||||||||| |
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| T |
42741891 |
tctcattgtcattttagatgtaaa |
42741868 |
T |
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