View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11100_high_6 (Length: 334)

Name: NF11100_high_6
Description: NF11100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11100_high_6
NF11100_high_6
[»] chr1 (1 HSPs)
chr1 (39-334)||(11593122-11593435)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 39 - 334
Target Start/End: Complemental strand, 11593435 - 11593122
Alignment:
Q  39 aagcactcattgttcatgcacttgtggaccaaaatgaagtagaagtgcttatcttcaaggtaagtttgaaatctatatgtcaataattgattttaagagt 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11593435 aagcactcattgttcatgcacttgtggaccaaaatgaagtagaagtgcttatcttcaaggtaagtttgaaatctatatgtcaataattgattttaagagt 11593336  T
Q  139 cttgctatccaataaccaataaaacaaacaaattatttataaatatatgaatctacnnnnnnnctgattagaaaaaggcaagaagtacatt-aaaattct 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||    
T  11593335 cttgctatccaataaccaataaaacaaacaaattatttataaatatatgaatctactttttttctgattagaaaaaggcaagaagtacattaaaaattct 11593236  T
Q  238 tgtgattttaccaaattt-----------------gtaggctaattgatgtagaaagatatttcttgaaagaaatttagtaacaaaccattttattacag 320  Q
    ||||||||||||||||||                 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11593235 tgtgattttaccaaatttttgttttacaaataatggtaggctaattgatgtagaaagaaatttcttgaaagaaatttagtaacaaaccattttattacag 11593136  T
Q  321 gggttttcttcatc 334  Q
    ||||||||||||||    
T  11593135 gggttttcttcatc 11593122  T

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