View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11100_high_8 (Length: 271)
Name: NF11100_high_8
Description: NF11100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11100_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 42742400 - 42742657
Alignment:
| Q |
1 |
caaagctaaataata--atatatcagagttccaattttgttagctttactatactatgttcctctcccctccacaaaatcacagacagataggtagatac |
98 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42742400 |
caaagctaaataatataatatatcagagttccaattttgttagctttactatactatgttcctctcccctcctcaaaatcacagacagataggtagatac |
42742499 |
T |
|
| Q |
99 |
tattatttacatgatcactaaaccaaaaacttaaaagagtaaaatgtataatatgcaagaagctttaaacttgcacactctccacctataaaaagaagaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42742500 |
tattatttacatgatcactaaaccaaaaacttaa--gagtaaaatgtataatatgcaagaagctttaaacttgcacactctccacctataaaaagaagaa |
42742597 |
T |
|
| Q |
199 |
cctcaacctccctctccctccatgttttctgctgcacatgcctctgaatttgattgccct |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42742598 |
cctcaacctccctctccctccatgttttctgctacacatgcctctgaatttgattgccct |
42742657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University