View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11100_low_10 (Length: 238)
Name: NF11100_low_10
Description: NF11100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11100_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 19949244 - 19949132
Alignment:
| Q |
110 |
tgtcatgtagcttagctagtataagaaataagtaacataagcaatcatgcaataaggtttcagttcgatgagcttataatgctttcaactaaggcctaac |
209 |
Q |
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| T |
19949244 |
tgtcatgtagcttagctagtataagaaataagtaacataagcaaacatgcaataaggtttcagttcgatgagcttataatgctttcaacaaaggtctagc |
19949145 |
T |
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| Q |
210 |
cttgccaccttca |
222 |
Q |
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| T |
19949144 |
cttgccaccttca |
19949132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 24838708 - 24838849
Alignment:
| Q |
83 |
ttcatttggtcttgtttttt-aacattct-gtcatgtagcttagctagtataagaaataagtaacataagcaatcatgcaataaggtttcagttcgatga |
180 |
Q |
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| T |
24838708 |
ttcatttggtcttgttttttcaacattcttgtcatgaagcttagctagtacaagaaataagtaacataagtgaacatgcaataaggtttcagttcattga |
24838807 |
T |
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| Q |
181 |
gcttataatgctttcaactaaggcctaaccttgccaccttca |
222 |
Q |
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| T |
24838808 |
gctaataatgttttcaactatggcctaaccttgccatcttca |
24838849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 22687957 - 22688016
Alignment:
| Q |
78 |
catgtttcatttggtcttgttttttaacattc-tgtcatgtagcttagctagtataagaa |
136 |
Q |
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| T |
22687957 |
catgtttcatttggttttctttttaaacattcttgtcatgtaacttatctagtataagaa |
22688016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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