View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11100_low_2 (Length: 478)
Name: NF11100_low_2
Description: NF11100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11100_low_2 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 15 - 460
Target Start/End: Complemental strand, 24225833 - 24225392
Alignment:
| Q |
15 |
cagagacggaattttatagttagagacggatttgaaattctaaggttagagacagatatttgagacagaattttccatgacaaatgttttccgtgtcaaa |
114 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24225833 |
cagagacagaattttatagttagagacagatttgaaattctaaggttagagacagatatttgagacagaattttccatgacaaatgttttccgtgtcaaa |
24225734 |
T |
|
| Q |
115 |
atccgtctctaagnnnnnnnnnnnnnnnnntttttaaaaacaaaatctaaccctttttacctctatgttggcctaaaaactcaattcaccccaaaattgc |
214 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24225733 |
atccgtctctaagtatatatatatata----tttttaaaacaaaatctaaccctttttacctctatgttggcccaaaaactcaattcaccccaaaattgc |
24225638 |
T |
|
| Q |
215 |
ccccatcggttcacatttcacaaaaccctaaatcaatttgcaggttccctctcaagcaaaatttcccacctttcatgttaatttcttccctcactcgcca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24225637 |
ccccatcggttcacatttcacaaaaccctaaatcaatttgcaggttccctctcaagcaaaatttcccacctttcatgttaatttcttccctcactcgcca |
24225538 |
T |
|
| Q |
315 |
aaaaccctttcaataatcctattccttcactttccctcactcacaaaataccctcgttcaccttcgtttctctctaatttcgatagatcttcctatgttg |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24225537 |
aaaaccctttcaataatcctattccttcactttccctcactcacaaaataccctcattcaccttcgtttctctctaatttcgatagatcttcctatgttg |
24225438 |
T |
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| Q |
415 |
actcccgtttgcgatttttgctcagctgaaagtcctcttccaatcc |
460 |
Q |
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| T |
24225437 |
actcccgtttgcgatttttgctcagctgaaagtcctcttccaatcc |
24225392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 456
Target Start/End: Original strand, 1690 - 2130
Alignment:
| Q |
15 |
cagagacggaattttatagttagagacggatttgaaattctaaggttagagacagatatttgagacagaattttccatgacaaatgttttccgtgtcaaa |
114 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
1690 |
cagagacataattttatagtttgagacggatttgaaattctaaggttagagacagatatttgagacagaattttccgtgacaaatgttttccatgtcaaa |
1789 |
T |
|
| Q |
115 |
atccgtctctaagnnnnnnnnnnnnnnnnntttttaaaaacaaaatctaaccctttttacctctatgttggcctaaaaactcaattcaccccaaaattgc |
214 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
1790 |
atccgtctctaagtaattatatatctatt-tttttaaaaacaaaatctaaccctttttacctctatgttggctcaaaaactcaattcaccccaaaattcc |
1888 |
T |
|
| Q |
215 |
ccccatcggttcacatttcacaaaaccctaaatcaatttgcaggttccctctcaagcaaaatttcccacctttcatgttaatttcttccctcactcgcca |
314 |
Q |
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|||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1889 |
ccccatcgattcacattgcacaaaaccctaaatcaattttcaggttccctctcaagtaaaatttcccacctttcatgttaatttcttccctcactcgcca |
1988 |
T |
|
| Q |
315 |
aaaaccctttcaataatcctattccttcactttccctcactcacaaaataccctcgttcaccttcgtttctctctaatttcgatagatcttcctatgttg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1989 |
aaaaccctttcaataatcctattccttcactttccctcactcacaaaataccctcgttcaccttcgtttctctctaatttcgatagatcttcctattttg |
2088 |
T |
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| Q |
415 |
actcccgtttgcgatttttgctcagctgaaagtcctcttcca |
456 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2089 |
actcccgtttgcgatttttgctcagctgaaagtcctcttcca |
2130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 456
Target Start/End: Original strand, 16412978 - 16413418
Alignment:
| Q |
15 |
cagagacggaattttatagttagagacggatttgaaattctaaggttagagacagatatttgagacagaattttccatgacaaatgttttccgtgtcaaa |
114 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
16412978 |
cagagacataattttatagtttgagacggatttgaaattctaaggttagagacagatatttgagacagaattttccgtgacaaatgttttccatgtcaaa |
16413077 |
T |
|
| Q |
115 |
atccgtctctaagnnnnnnnnnnnnnnnnntttttaaaaacaaaatctaaccctttttacctctatgttggcctaaaaactcaattcaccccaaaattgc |
214 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
16413078 |
atccgtctctaagtaattatatatctatt-tttttaaaaacaaaatctaaccctttttacctctatgttggctcaaaaactcaattcaccccaaaattcc |
16413176 |
T |
|
| Q |
215 |
ccccatcggttcacatttcacaaaaccctaaatcaatttgcaggttccctctcaagcaaaatttcccacctttcatgttaatttcttccctcactcgcca |
314 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16413177 |
ccccatcgattcacattgcacaaaaccctaaatcaattttcaggttccctctcaagtaaaatttcccacctttcatgttaatttcttccctcactcgcca |
16413276 |
T |
|
| Q |
315 |
aaaaccctttcaataatcctattccttcactttccctcactcacaaaataccctcgttcaccttcgtttctctctaatttcgatagatcttcctatgttg |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16413277 |
aaaaccctttcaataatcctattccttcactttccctcactcacaaaataccctcgttcaccttcgtttctctctaatttcgatagatcttcctattttg |
16413376 |
T |
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| Q |
415 |
actcccgtttgcgatttttgctcagctgaaagtcctcttcca |
456 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16413377 |
actcccgtttgcgatttttgctcagctgaaagtcctcttcca |
16413418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 33098381 - 33098169
Alignment:
| Q |
24 |
aattttatagttagagacggatttgaaattctaaggttagagacagatatttgagacagaattttccatgacaaatgttttccgtgtcaaaatccgtctc |
123 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |
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| T |
33098381 |
aattttatagtttgagacggatttgaaattctaaggttagagactgatatttgagacaaaattttccgtgacaaatgttttcggtgtcaaaatccgtctc |
33098282 |
T |
|
| Q |
124 |
taagnnnnnnnnnnnnnnnnntttttaaaaacaaaatctaaccctttttacctctatgttggcctaaaaactcaattcaccccaaaattgcccccatcgg |
223 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| | ||||||||| |
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| T |
33098281 |
taag--taattatatatatattttttaaaaacaaaatctaaccctttttacctctacgttggctccaaaactcaattgaccccaaaactccccccatcga |
33098184 |
T |
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| Q |
224 |
ttcacatttcacaaa |
238 |
Q |
| |
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||||||||||||||| |
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| T |
33098183 |
ttcacatttcacaaa |
33098169 |
T |
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