View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11100_low_5 (Length: 396)
Name: NF11100_low_5
Description: NF11100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11100_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 9461369 - 9461000
Alignment:
| Q |
16 |
aaaaacctgtttcccaaattaannnnnnncaattcatggttccatcccacggaattaccctaaaacatccaaacaaagaggtcaatataacacgtgctaa |
115 |
Q |
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| T |
9461369 |
aaaaacctgtttcccaaattaatttttttcaattcatggttccatcccacggaattaccctaaaacatccaaacaaagaggtcaatataacacgtgctaa |
9461270 |
T |
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| Q |
116 |
ccaatctatagacacttaatttaaactcttgatatttatatgaatagttttattttaattggcatcatatattatgaaatttttgggtttatttggatta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9461269 |
ccaatctatagacacttaatttaaactcttgatatttatatgaatagttttattttaattagcatcatatattatgaaatttttgggtttatttggatta |
9461170 |
T |
|
| Q |
216 |
acctttctggtttgttgcaggtactagctagtgttgagccatgggagtgtcactgttatctggacatgtatatttatttatgatacgtatgagattaaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9461169 |
acctttctggtttgttgcaggtactagctagtgttgagccatgggagtgtcactgttatctggacatgtatatttatttatgatacgtatgagattaaat |
9461070 |
T |
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| Q |
316 |
acttaggttttctttgtgtctcatatgaccaaagaattgaaccatgtgattttgtaatttgtgtgttcat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9461069 |
acttaggttttctttgtgtctcatatgaccaaagaattgaaccatgtgattttgtaatttgtgtgttcat |
9461000 |
T |
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