View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11100_low_6 (Length: 341)
Name: NF11100_low_6
Description: NF11100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11100_low_6 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 33618874 - 33618534
Alignment:
| Q |
1 |
agtcaccactgccaggacaatggacacagcaatcttcacatttttgagacaaagtattttaattagtaacaagtggaactaaataaaaaatgttaaatag |
100 |
Q |
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| T |
33618874 |
agtcaccactgccaggacaatggacacagcaatcttcacattgttgagacaaagtattttaattagtaacaagtggaactaaataaaaaatgttaaatag |
33618775 |
T |
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| Q |
101 |
cttaaaagcaataatcaagccttatcccactaagtgagtcggctgcatgaataaaatgacgcaatgatgttaaacaacttaaaaatatatttcataggga |
200 |
Q |
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| T |
33618774 |
cttaaaagcaataatcaagccttatcccactaagtgagttggctgcatgaataaaatgacgcaatgatgttaaacaacttaaaaatatatttcataggga |
33618675 |
T |
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| Q |
201 |
cacaaaatatattagctaacaaaaggatagataggtttagttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgacc |
300 |
Q |
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| T |
33618674 |
cacaaaatatattaactaacaaaaagatagataggtttagttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgacc |
33618575 |
T |
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| Q |
301 |
aattcgatcaacaataccagcagagataaggttagacaaaa |
341 |
Q |
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| T |
33618574 |
aattcgatcaacaataccagcagagataaggttagacaaaa |
33618534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 33609459 - 33609362
Alignment:
| Q |
241 |
ttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagaca |
338 |
Q |
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| T |
33609459 |
ttcgcttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagagataacgttagaca |
33609362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 33627851 - 33627779
Alignment:
| Q |
239 |
agttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaa |
311 |
Q |
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| T |
33627851 |
agttcacttaccaagcagacaaacatgataatacccccagtaatgaacaagaatcttcgaccaaatcgatcaa |
33627779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 33622824 - 33622758
Alignment:
| Q |
245 |
cttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaa |
311 |
Q |
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| T |
33622824 |
cttacaaagcagacaaacatcataacacccccggttatgaacaagaatcttcgaccaaatctatcaa |
33622758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 33609589 - 33609551
Alignment:
| Q |
4 |
caccactgccaggacaatggacacagcaatcttcacatt |
42 |
Q |
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| T |
33609589 |
caccactgctagcacaatggacacagcaatcttcacatt |
33609551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 19908043 - 19908102
Alignment:
| Q |
113 |
aatcaagccttatcccactaagt-gagtcggctgcatgaataaaatgacgcaatgatgtt |
171 |
Q |
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| T |
19908043 |
aatcaagccttatcccactaagtggggtcggctacatggataaaattacgcaataatgtt |
19908102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 43240391 - 43240437
Alignment:
| Q |
117 |
aagccttatcccactaagtga-gtcggctgcatgaataaaatgacgc |
162 |
Q |
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| T |
43240391 |
aagccttatcccactaagtgaggtcggctacatgaatcaaatgacgc |
43240437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 38900227 - 38900181
Alignment:
| Q |
116 |
caagccttatcccactaagtgagtcggctgcatgaataaaatgacgc |
162 |
Q |
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| T |
38900227 |
caagccttatcccactaagtgggtcggctacatggatcaaatgacgc |
38900181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 51811290 - 51811335
Alignment:
| Q |
116 |
caagccttatcccactaagtgagtcggctgcatgaataaaatgacg |
161 |
Q |
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| T |
51811290 |
caagccttatcccactaagtgggtcggctacatggatcaaatgacg |
51811335 |
T |
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