View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11100_low_8 (Length: 304)
Name: NF11100_low_8
Description: NF11100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11100_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 29021918 - 29022030
Alignment:
| Q |
17 |
tgaaagagaagcgagtcgaggtcaccatagtagcaccttaggtcgagagagttgaggttggagaatctagggaataagtcacaaaggaaaggtggtgttg |
116 |
Q |
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| T |
29021918 |
tgaaagagaagcgagtcgaggtcaccatagtagcaccttaggtcgagagagttgaggttggagaatctagggaataagtcacaaaggaaaggtggtgttg |
29022017 |
T |
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| Q |
117 |
gatcatatatagt |
129 |
Q |
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| T |
29022018 |
gatcatatatagt |
29022030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 190 - 283
Target Start/End: Original strand, 29022091 - 29022184
Alignment:
| Q |
190 |
cttgaaagagcaacggttatcgtcgtcgtcaccgtctttgaataagaatttgaagatgcattcccaacactcgtcaggtaaataaagatctgaa |
283 |
Q |
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| T |
29022091 |
cttgaaagagcaacggttatcgtcgtcgtcaccgtctttgaagaggaatttgaagatgcattcccaacactcgtcaggtaaataaagatctgaa |
29022184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 28661129 - 28661017
Alignment:
| Q |
17 |
tgaaagagaagcgagtcgaggtcaccatagtagcaccttaggtcgagagagttgaggttggagaatctagggaataagtcacaaaggaaaggtggtgttg |
116 |
Q |
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| T |
28661129 |
tgaaatagaagtgagtcaaggttaccgtagtaacatgttaggtcgagagagttcaggttggagaatctagggaatagactacagaggaagggtggtgttg |
28661030 |
T |
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| Q |
117 |
gatcatatatagt |
129 |
Q |
| |
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| T |
28661029 |
gatcatatatagt |
28661017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 28660940 - 28660880
Alignment:
| Q |
218 |
tcaccgtctttgaataagaatttgaagatgcattcccaacactcgtcaggtaaataaagat |
278 |
Q |
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| T |
28660940 |
tcaccatcgttgaagaggaatttgaagatgcattcccaacactagtcacgtaaatgaagat |
28660880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 13469223 - 13469172
Alignment:
| Q |
222 |
cgtctttgaataagaatttgaagatgcattcccaacactcgtcaggtaaata |
273 |
Q |
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| T |
13469223 |
cgtcgttgaatataaatttgaagatacgttcccaacactcgtcaggtaaata |
13469172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 10616200 - 10616246
Alignment:
| Q |
227 |
ttgaataagaatttgaagatgcattcccaacactcgtcaggtaaata |
273 |
Q |
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||||||| ||||||||||| |||||||||||||| ||||||||||| |
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| T |
10616200 |
ttgaatataaatttgaagatacattcccaacactcatcaggtaaata |
10616246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 1547411 - 1547373
Alignment:
| Q |
235 |
gaatttgaagatgcattcccaacactcgtcaggtaaata |
273 |
Q |
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| T |
1547411 |
gaatttgaagatagattcccaacactcgtcaggtaaata |
1547373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 44575137 - 44575097
Alignment:
| Q |
233 |
aagaatttgaagatgcattcccaacactcgtcaggtaaata |
273 |
Q |
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| T |
44575137 |
aagaatttgaagatgtgttcccaacactcatcaggtaaata |
44575097 |
T |
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