View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11101_high_4 (Length: 439)
Name: NF11101_high_4
Description: NF11101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11101_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 1984845 - 1984434
Alignment:
| Q |
18 |
aatcaaagggcctttgcatggaattaaaaaggtacttatatctgcacctctaaaagtccttaaaaaattaccttgggaaaacataacaaaccttccaggt |
117 |
Q |
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| T |
1984845 |
aatcaaagggcctttgcatggaatcaaaaaggtacttatatctgcacctctaaaagtccttaaaaagttaccttgggaaaacataaccaaccttccagga |
1984746 |
T |
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| Q |
118 |
atcaaacttgtaaaacaacctattgaacacttgttaaactctcaaaagaaagaagaggaaaaaccaaacgatgaaaactcaagtactctaaagaacaaaa |
217 |
Q |
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| T |
1984745 |
atcaaacttgtaaaacaacctattgaatactttttaaacactcaaaagaaagaagaggaaaaaccaaaagatgaaaactctagtactctaaagaacaaaa |
1984646 |
T |
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| Q |
218 |
cacccttggtggaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattt |
317 |
Q |
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| T |
1984645 |
cacccttggtggaggaaatcgctattccttctgttgaacaacttgtgactgcaggggttaatttcttacctgcaaaaggaagcatatcaagcattagttt |
1984546 |
T |
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| Q |
318 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttgga |
417 |
Q |
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| T |
1984545 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtcaacaccgaagtttttcttcgaaacttggttgcatacgaatcatcggttgga |
1984446 |
T |
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| Q |
418 |
tccggacctttg |
429 |
Q |
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| T |
1984445 |
tcgggacctttg |
1984434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 218 - 429
Target Start/End: Complemental strand, 1977724 - 1977513
Alignment:
| Q |
218 |
cacccttggtggaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattt |
317 |
Q |
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| T |
1977724 |
cacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaatggaagcatatcaagcattagttt |
1977625 |
T |
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| Q |
318 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttgga |
417 |
Q |
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| T |
1977624 |
tgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaacttggttgcatatgaatcatcggttgga |
1977525 |
T |
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| Q |
418 |
tccggacctttg |
429 |
Q |
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| T |
1977524 |
tcgggacctttg |
1977513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 232 - 425
Target Start/End: Original strand, 1948696 - 1948889
Alignment:
| Q |
232 |
gaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattttgatgctaaaacaa |
331 |
Q |
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||||||||||||||||||||| || ||||||||| | || || ||||| | ||||| ||||| ||||||||||| |||| ||||||||| ||||||| |
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| T |
1948696 |
gaaatcactattccttctgttaaagaacttgtgaaatcaggagtgaatttttctcctactaatgggagcatatcaagtattagttttgatgcaaaaacaa |
1948795 |
T |
|
| Q |
332 |
acacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttggatccggacc |
425 |
Q |
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|||||| ||||||| | || |||||||||| || ||||||||||| | |||||||||||||| || ||||||||||||||||| ||||| |
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| T |
1948796 |
gaactttttaccttcctattatcggtttggatgttaataccgaagtttttctaagaaacttggttgcgtatgaatcatcggttggatcgggacc |
1948889 |
T |
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