View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11101_high_7 (Length: 283)
Name: NF11101_high_7
Description: NF11101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11101_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 35915250 - 35914997
Alignment:
| Q |
20 |
aattctgacggaaaaacattataccgcaacccatatgcttggaatgaaggtgagacaatcatcaatataactaatttatttctttatgatgcatgcctga |
119 |
Q |
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| T |
35915250 |
aattctgatggaaaaacattataccgcaacccatatgcttggaatgaaggtgagacaatcatcaatataactaatttatttctttatgatgcatgcctga |
35915151 |
T |
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| Q |
120 |
gacatgattatcttaccaacttatatccttatgaaatatgcagttgcaaatgtactcttcttggaatctccggcaggcgtaggattttcctactcaaaca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35915150 |
gacatgattatcttaccaacttatatccttatgaaatatgcagttgcaaatgtactcttcttggaatctccggcaggagtaggattttcctactcaaaca |
35915051 |
T |
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| Q |
220 |
caacatctgactatgacaattcaggagataagtccaccgctaaagatgcctatg |
273 |
Q |
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| T |
35915050 |
caacatctgactatgacaattcaggagataagtccaccgctaaagatgcctatg |
35914997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 35921618 - 35921369
Alignment:
| Q |
23 |
tctgacggaaaaacattataccgcaacccatatgcttggaatgaaggtgagacaatcatcaatataactaatttatttctttatgatgcatgcctgagac |
122 |
Q |
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| T |
35921618 |
tctgatggcaaaacattataccgtaacccatatgcttggaatgaaggtgagatgatcatcgatataactaatgtgtta-tttatgatgcatttctgagac |
35921520 |
T |
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| Q |
123 |
atgattatcttaccaacttatatccttatgaaatatgcagttgcaaatgtactcttcttggaatctccggcaggcgtaggattttcctactcaaacacaa |
222 |
Q |
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| T |
35921519 |
atgattatcttagaaacttaactccttatgaaatatgcagtggcaaatgtactcttcttggaatctccagcaggggtaggattttcctactcaaacacat |
35921420 |
T |
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| Q |
223 |
catctgactatgacaattcaggagataagtccaccgctaaagatgcctatg |
273 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35921419 |
catcggactatgacaattcaggagataagtccactgctaaagatgcctatg |
35921369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 35940597 - 35940361
Alignment:
| Q |
23 |
tctgacggaaaaacattataccgcaacccatatgcttggaatgaaggtgagacaatcatca---------atataactaatttatttctttatgatgcat |
113 |
Q |
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| T |
35940597 |
tctgatggaaaaacactataccgtaacccatatgcttggaatgaaggtgaaacaatcatcatcatcatcaatataattacattgtttctttatgatgcat |
35940498 |
T |
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| Q |
114 |
gcctgagacatgattatcttaccaacttatatccttatgaaatatgcagttgcaaatgtactcttcttggaatctccggcaggcgtaggattttcctact |
213 |
Q |
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||||||||||| |||||||| |||||||||| |||||||||||||||| || || |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
35940497 |
ttctgagacatgaatatcttacaaacttatatcattatgaaatatgcagtggcgaacgtactcttcttggaatctccagcaggaataggattttcctact |
35940398 |
T |
|
| Q |
214 |
caaacacaacatctgactatgacaattcaggagataa |
250 |
Q |
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| T |
35940397 |
caaacacaacatctgactatgacaaatcaggagataa |
35940361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 35910820 - 35910582
Alignment:
| Q |
23 |
tctgacggaaaaacattataccgcaacccatatgcttggaatgaaggtgagacaatcatca---------atataactaatttatttctttatgatgcat |
113 |
Q |
| |
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||||| || |||||| ||||||| |||||||||||||||||||||||||| |||||||||| |||||| || || |||||| ||||||||| |
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| T |
35910820 |
tctgatggcaaaacactataccgtaacccatatgcttggaatgaaggtgaaacaatcatcatcatcatcaatataattacattgtttctt-atgatgcat |
35910722 |
T |
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| Q |
114 |
gcctgagacatgattatcttaccaacttatatccttatgaaatatgcagttgcaaatgtactcttcttggaatctccggcaggcgtaggattttcctact |
213 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||| || || ||||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
35910721 |
ttctgagacatgaatatcttaccaacttatatcattatgaaatatgcagtggcgaacgtactcttcttagaatctccagcaggagtaggattttcctact |
35910622 |
T |
|
| Q |
214 |
caaacacaacatctgactatgacaattcaggagataagtc |
253 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
35910621 |
caaacacaacatctgactatgacaaatcaggagataagtc |
35910582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 35928212 - 35927985
Alignment:
| Q |
23 |
tctgacggaaaaacattataccgcaacccatatgcttggaatgaaggtgagacaatcatcaatataactaatttatttctttatgatgcatgc---ctga |
119 |
Q |
| |
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||||| || |||||| ||||||| |||| ||||||||||| ||||||||| ||||||||| ||| || || || |||||| ||||||||| || | |
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| T |
35928212 |
tctgatggcaaaacactataccgtaaccaatatgcttggactgaaggtgaaacaatcatcgatagaatgaaattgtttctt-atgatgcatttattctta |
35928114 |
T |
|
| Q |
120 |
gacatgattatcttaccaacttatatccttatgaaatatgcagttgcaaatgtactcttcttggaatctccggcaggcgtaggattttcctactcaaaca |
219 |
Q |
| |
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||||||| || ||||||| |||| | |||||||||||||||||||||||||||| ||||| || ||||| ||||| || ||||||||||| ||||||| |
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| T |
35928113 |
gacatgaataacttaccagtttat--cattatgaaatatgcagttgcaaatgtactattcttagagtctccagcaggagtgggattttcctattcaaaca |
35928016 |
T |
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| Q |
220 |
caacatctgactatgacaattcaggagataa |
250 |
Q |
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|||| |||||||||||||| ||||||||||| |
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| T |
35928015 |
caacttctgactatgacaagtcaggagataa |
35927985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 35935028 - 35934775
Alignment:
| Q |
23 |
tctgacggaaaaacattataccgcaacccatatgcttggaatgaaggtgagacaatcatca---atataactaatttatttctttatgatgcatgcctga |
119 |
Q |
| |
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||||| ||||||||||||||||| |||| ||||||||||| ||||||| ||||||||| | |||| | ||| | ||||| || |||||| || |
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| T |
35935028 |
tctgatggaaaaacattataccgtaaccaatatgcttggagtgaaggtatgacaatcataatcgatatgattaaatgttttctccattatgcatttaaga |
35934929 |
T |
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| Q |
120 |
gacatgattatcttaccaacttatatccttatgaaatat--gcagttgcaaatgtactcttcttggaatctccggcaggcgtaggattttcctactcaaa |
217 |
Q |
| |
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||||||| |||| ||||| |||| | |||| |||||| |||||||||||| |||||||||| || ||||| ||||| || ||||||||||||||||| |
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| T |
35934928 |
gacatgaacatctaaccaatttat--cattataaaatatatgcagttgcaaatatactcttcttagagtctccagcaggagtgggattttcctactcaaa |
35934831 |
T |
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| Q |
218 |
cacaacatctgactatgacaattcaggagataagtccaccgctaaagatgcctatg |
273 |
Q |
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|||||| ||||||||| | || |||||||||||||||| |||||||||||||||| |
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| T |
35934830 |
cacaacttctgactataaaaaagcaggagataagtccactgctaaagatgcctatg |
35934775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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