View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11101_low_1 (Length: 673)

Name: NF11101_low_1
Description: NF11101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11101_low_1
NF11101_low_1
[»] chr8 (2 HSPs)
chr8 (183-255)||(12933811-12933883)
chr8 (195-232)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (183-255)||(14177081-14177153)
chr4 (141-255)||(28608680-28608794)
chr4 (194-247)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (225-262)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (225-262)||(796698-796735)
chr6 (225-262)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (225-262)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 12933883 - 12933811
Alignment:
Q  183 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 255  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933883 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  195 ggttgctccatataaatctcctcttccaaatctccatg 232  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 14177153 - 14177081
Alignment:
Q  183 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 255  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177153 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 255
Target Start/End: Original strand, 28608680 - 28608794
Alignment:
Q  141 ctcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaat 239  Q
    ||||| ||||||||||| |||| ||| | ||||| || || ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||    
T  28608680 ctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaat 28608778  T
Q  240 gcagttttcacatcca 255  Q
    ||||| || |||||||    
T  28608779 gcagtctttacatcca 28608794  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  194 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 247  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  225 tctccatgaagaaatgcagttttcacatccaactgctc 262  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  225 tctccatgaagaaatgcagttttcacatccaactgctc 262  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  225 tctccatgaagaaatgcagttttcacatccaactgctc 262  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  225 tctccatgaagaaatgcagttttcacatccaactgctc 262  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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