View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11101_low_10 (Length: 250)
Name: NF11101_low_10
Description: NF11101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11101_low_10 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 35914529 - 35914772
Alignment:
| Q |
7 |
ggagcagagatgttataggagtctatctttccttgctcaaggaaggccttatgtgttgcattgatacaaattgatgaaacgttttcagaagtgaagtcgc |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35914529 |
ggagcatagatgttataggagtctatctttccttgctcaaggaaggccttatgtgttgcattgatacaaattgatgaaacgttttcagaagtgaagtcac |
35914628 |
T |
|
| Q |
107 |
aatacttctcaatcaactcatgagtttgatccgagttcaacgcatgagtccaaaggtaatcaaataacccctttaaacctgtggcatcatcaatccaagc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35914629 |
aatacttctcaatcaactcatgagtttgatccgagttcaacgcatgagtccaaaggtaatcaaataacccccttaaacctgtggcatcatcaatccaagc |
35914728 |
T |
|
| Q |
207 |
attccctatctgaaattttttattgtaaagatattgataaagtt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35914729 |
attccctatctgaaattttttattgtaaagataatgataaagtt |
35914772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 35910091 - 35910326
Alignment:
| Q |
7 |
ggagcagagatgttataggagtctatctttccttgctcaaggaaggccttatgtgttgcatt---gatacaaattgatgaaacgttttcagaagtgaagt |
103 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| || |||| ||||||||| ||||| |||| ||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
35910091 |
ggagcatagatgttatataagtctatctttccatgttcaaagaaggcctttagtgttacattattgatacaaattgctgaaacattttcagtagtgaagt |
35910190 |
T |
|
| Q |
104 |
cgcaatacttctcaatcaactcatgagtttgatccgagttcaacgcatgagtccaaaggtaatcaaataacccctttaaacctgtggcatcatcaatcca |
203 |
Q |
| |
|
| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
35910191 |
cacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaggtaatcaaaaaacccctttaaacttgtggcatcatcaatcca |
35910290 |
T |
|
| Q |
204 |
agcattccctatctgaaattttttattgtaaagata |
239 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35910291 |
agcattccctatctgaaattttttaaagtaaagata |
35910326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 35934315 - 35934522
Alignment:
| Q |
14 |
agatgttataggagtctatctttccttgctcaaggaaggccttatgtgttgcattgatacaaattgatgaaacgttttcagaagtgaagtcgcaatactt |
113 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||||||| || |||| ||||||||||||||| |||| |||| ||||||||| || ||||| |
|
|
| T |
35934315 |
agatgttatagaagtctatctttcctttctcaatgaaggcccaatctgttacattgatacaaattgttgaataattttgtttagtgaagtcacagtactt |
35934414 |
T |
|
| Q |
114 |
ctcaatcaactcatgagtttgatccgagttcaacgcatgagtccaaaggtaatcaaataacccctttaaacctgtggcatcatcaatccaagcattccct |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
35934415 |
ctcaatcaactcatgagtttgatctgagttcaaagcatgagtccagaagtaatcaaataaccccttgtcacctgtagcatcatcaatccaagcattccct |
35934514 |
T |
|
| Q |
214 |
atctgaaa |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
35934515 |
atctgaaa |
35934522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 96 - 250
Target Start/End: Original strand, 35927583 - 35927737
Alignment:
| Q |
96 |
agtgaagtcgcaatacttctcaatcaactcatgagtttgatccgagttcaacgcatgagtccaaaggtaatcaaataacccctttaaacctgtggcatca |
195 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||| || ||||| ||||||||||||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
35927583 |
agtgaagtcacagtacttctcaatcaactcatgagtttgatctgaattcaaagcatgagtccaaaagtaatcaaataaccccttcaaacttgtggcatca |
35927682 |
T |
|
| Q |
196 |
tcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagtt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
35927683 |
tcaatccaagcattccctatctgaaattttttaaagtaaagataataataaagtt |
35927737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 35920909 - 35921121
Alignment:
| Q |
15 |
gatgttataggagtctatctttccttgctcaaggaaggccttatgtgttgcattgatacaaattgatgaaacgttttcagaagtgaagtcgcaatacttc |
114 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||||||||| ||||||||| ||||||||| |||||| ||||| ||||||||| || |||||| |
|
|
| T |
35920909 |
gatgttatagatgtctatctttcctgtctcaacgaaggccttatcagttgcattgttacaaattgctgaaacattttctttagtgaagtcacagtacttc |
35921008 |
T |
|
| Q |
115 |
tcaatcaactcatgagtttgatccgagttcaacgcatgagtccaaaggtaatcaaataacccctttaaacctgtggcatcatcaatccaagcattcccta |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||||||||| | || |||| ||| |||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
35921009 |
tcaatcaactcatgagtttgatctgagtttaaagcatgagtccacaagttatcatatatcccctttaaattcgtcgcatcatcaatccaagcattcccta |
35921108 |
T |
|
| Q |
215 |
tctgaaatttttt |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35921109 |
tctgaaatttttt |
35921121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 35939874 - 35940092
Alignment:
| Q |
7 |
ggagcagagatgttataggagtctatctttccttgctcaaggaaggccttatgtgttgcattgatacaaattgatgaaacgttttcagaagtgaagtcgc |
106 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| ||||| | || | ||| |||||||| ||||||||| |||| |||| ||||||||| | |
|
|
| T |
35939874 |
ggagcatagatgttaaaggagtctatctttcctttctcaatcatggacatattcattgcattggtacaaattgctgaataattttgtttagtgaagtcac |
35939973 |
T |
|
| Q |
107 |
aatacttctcaatcaactcatgagtttgatccgagttcaacgcatgagtccaaaggtaatcaaataacccctttaaacctgtggcatcatcaatccaagc |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||| | || |||| ||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
35939974 |
agtacttctcaatcaactcatgagtttgatccgagttcaaagcatgagtccacaagttatcatataacccctttaaacttgtagcatcatcaatccaagc |
35940073 |
T |
|
| Q |
207 |
attccctatctgaaatttt |
225 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
35940074 |
attccctaactgaaatttt |
35940092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 21285218 - 21285096
Alignment:
| Q |
7 |
ggagcagagatgttataggagtctatctttccttgctcaaggaaggccttatgtgttgcatt---gatacaaattgatgaaacgttttcagaagtgaagt |
103 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| || |||| |||||||| ||||| |||| ||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
21285218 |
ggagcatagatgttatataagtctatctttccatgttcaaacaaggcctttagtgttacattattgatacaaattgctgaaacattttcagtagtgaagc |
21285119 |
T |
|
| Q |
104 |
cgcaatacttctcaatcaactca |
126 |
Q |
| |
|
| || |||||||||||||||||| |
|
|
| T |
21285118 |
cacagtacttctcaatcaactca |
21285096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University