View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11101_low_13 (Length: 248)
Name: NF11101_low_13
Description: NF11101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11101_low_13 |
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| [»] scaffold0159 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5826803 - 5826566
Alignment:
| Q |
1 |
gttatttgaacagcttaaatttgtcaactttcgttaaccacttaaaaagttgtctaaatttggttgttnnnnnnntaatttctctttgcacaatgatgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5826803 |
gttatttgaacagcttaaatttgtcaactttcgttaaccacttaaaaagttgtctaaatttggttgttaaaaaaataatttctctttgcacaatgatgag |
5826704 |
T |
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| Q |
101 |
atttactaaagtaattattaaatgattacctttccagctgggatgctaagacacaaatctttgaaaatttgaatattaggccttgttgggtatctaaagc |
200 |
Q |
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| T |
5826703 |
atttactaaagtaattattaaatgattacctttccagctgggatgctaagacacaaatctttgaatatttgaatattaggccttgttgggtatctaaagc |
5826604 |
T |
|
| Q |
201 |
tgactttttgaagttcaaaatcacctttcacaggttct |
238 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
5826603 |
tgactttttgaagttcaaaatcacctttcacagtttct |
5826566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 5782180 - 5782018
Alignment:
| Q |
76 |
taatttctctttgcacaatgatgagatttactaaagtaattattaaatgattacctttccagctgggatgctaagacacaaatctttgaaaatttgaata |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5782180 |
taatttctctttgcacaatgatgagatttactaaagtaattattaaatgattacctttccagctgggatgctaagacacaaatctttgaatatttgaata |
5782081 |
T |
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| Q |
176 |
ttaggccttgttgggtatctaaagctgactttttgaagttcaaaatcacctttcacaggttct |
238 |
Q |
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| T |
5782080 |
ttaggccttgttgggtatctaaagctgactttttgaagttcaaaatcacctttcacagtttct |
5782018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 5768338 - 5768241
Alignment:
| Q |
121 |
aatgattacctttccagctgggatgctaagacacaaatctttgaaaatttgaatattaggccttgttgggtatctaaagctgactttttgaagttcaa |
218 |
Q |
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||||||||||||||| || |||||| ||||| |||||||||||||||||||| | ||| ||||||||||| | |||||||| | ||||||||||| |
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| T |
5768338 |
aatgattacctttccggcagggatgtatagacataaatctttgaaaatttgaatgtgaggtcttgttgggtaattgaagctgacatgttgaagttcaa |
5768241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 5830093 - 5830193
Alignment:
| Q |
125 |
attacctttccagctgggatgctaagacacaaatctttgaaaatttgaatattaggccttgttgggtatctaaagctgactttttgaagttcaaaatcac |
224 |
Q |
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| T |
5830093 |
attacctttgcagatgggatgcttaggcttaaatctttgaaaatttgaatgtcgggccttgttgggtaattaaagttgacatgttgaagttcaatatcac |
5830192 |
T |
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| Q |
225 |
c |
225 |
Q |
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| T |
5830193 |
c |
5830193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 27512 - 27350
Alignment:
| Q |
76 |
taatttctctttgcacaatgatgagatttactaaagtaattattaaatgattacctttccagctgggatgctaagacacaaatctttgaaaatttgaata |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27512 |
taatttctctttgcacaatgatgagatttactaaagtaattattaaatgattacctttccagctgggatgctaagacacaaatctttgaatatttgaata |
27413 |
T |
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| Q |
176 |
ttaggccttgttgggtatctaaagctgactttttgaagttcaaaatcacctttcacaggttct |
238 |
Q |
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| T |
27412 |
ttaggccttgttgggtatctaaagctgactttttgaagttcaaaatcacctttcacagtttct |
27350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 35643 - 35481
Alignment:
| Q |
76 |
taatttctctttgcacaatgatgagatttactaaagtaattattaaatgattacctttccagctgggatgctaagacacaaatctttgaaaatttgaata |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35643 |
taatttctctttgcacaatgatgagatttactaaagtaattattaaatgattacctttccagctgggatgctaagacacaaatctttgaatatttgaata |
35544 |
T |
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| Q |
176 |
ttaggccttgttgggtatctaaagctgactttttgaagttcaaaatcacctttcacaggttct |
238 |
Q |
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| T |
35543 |
ttaggccttgttgggtatctaaagctgactttttgaagttcaaaatcacctttcacagtttct |
35481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 29327614 - 29327704
Alignment:
| Q |
126 |
ttacctttccagctgggatgctaagacacaaatctttgaaaatttgaatattaggccttgttgggtatctaaagctgactttttgaagttc |
216 |
Q |
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|||||||| ||| ||||||||| || |||||||||||||||||||| | || ||||||||||| |||||| |||| | ||||||||| |
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| T |
29327614 |
ttacctttgcagatgggatgcttagggttaaatctttgaaaatttgaatgtcgggtcttgttgggtaactaaagttgacgtgttgaagttc |
29327704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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