View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11101_low_16 (Length: 217)
Name: NF11101_low_16
Description: NF11101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11101_low_16 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 5827021 - 5826806
Alignment:
| Q |
2 |
tgttgtctcaaccagcttagtttgaaagttttgatattcagtccatctagtaatatatgtccagaatcagggttataaaatctctccaagagacttataa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827021 |
tgttgtctcaaccagcttagtttgaaagttttgatattcagtccatctagtaatatatgtccagaatcagggttataaaatctctccaagagacttataa |
5826922 |
T |
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| Q |
102 |
ctgttgattttccactgccactttctccaaccaaggcaacagtctacatataaatatatcaacaatgtaattaattatctcacatattatcaaatgagta |
201 |
Q |
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| T |
5826921 |
ctgttgattttccactgccactttctccaaccaaggcaacagtctacatataaatatatcaacaatgtaattaattatctcacatattatcaaatgagta |
5826822 |
T |
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| Q |
202 |
catttgtacaacagtt |
217 |
Q |
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|||||||||||||||| |
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| T |
5826821 |
catttgtacaacagtt |
5826806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 5768569 - 5768403
Alignment:
| Q |
1 |
ctgttgtctcaaccagcttagtttgaaagttttgatattcagtccatctagtaatatatgtccagaatcagggttataaaatctctccaagagacttata |
100 |
Q |
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|||||||||||||||||||||| |||||||||| |||| || |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |
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| T |
5768569 |
ctgttgtctcaaccagcttagtctgaaagtttttatatccactccatctagtaatatacgtccagagtcagggttataaaatctctctaagagacttata |
5768470 |
T |
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| Q |
101 |
actgttgattttccactgccactttctccaaccaaggcaacagtctacatataaatatatcaacaat |
167 |
Q |
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| T |
5768469 |
actgttgattttccactgccactttctccaaccaaagcaacagtctacataaaaatatatcaacaat |
5768403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 5829880 - 5830045
Alignment:
| Q |
2 |
tgttgtctcaaccagcttagtttgaaagttttgatattcagtccatctagtaatatatgtccagaatcagggttataaaatctctccaagagacttataa |
101 |
Q |
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| T |
5829880 |
tgttgtctcaaccagcttaatctgaaagttttgagatccactccatctagtaatatacgtccagaattagggtcataaaatctctctaagaggctgataa |
5829979 |
T |
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| Q |
102 |
ctgttgattttccactgccactttctccaaccaaggcaacagtctacatataaatatatcaacaat |
167 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| || | | |||||||| |||| |
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| T |
5829980 |
ctgttgattttccactgccactttctccaaccaaggcaatagtctgcaaagacatatatcatcaat |
5830045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 29327394 - 29327538
Alignment:
| Q |
2 |
tgttgtctcaaccagcttagtttgaaagttttgatattcagtccatctagtaatatatgtccagaatcagggttataaaatctctccaagagacttataa |
101 |
Q |
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||||||||||||||||||| | ||||||||||||||| || |||||||||||||| |||| |||| ||||| |||||||||||| ||||| || |||| |
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| T |
29327394 |
tgttgtctcaaccagcttattctgaaagttttgatatccactccatctagtaatacgcgtccggaattagggtcataaaatctctctaagaggctgataa |
29327493 |
T |
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| Q |
102 |
ctgttgattttccactgccactttctccaaccaaggcaacagtct |
146 |
Q |
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| T |
29327494 |
ctgttgattttccactgccgctttctccaaccaaagcaacagtct |
29327538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 29934449 - 29934494
Alignment:
| Q |
101 |
actgttgattttccactgccactttctccaaccaaggcaacagtct |
146 |
Q |
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| T |
29934449 |
actgttgattttccacttccactttctccaaccagggcaaccgtct |
29934494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 51159577 - 51159544
Alignment:
| Q |
101 |
actgttgattttccactgccactttctccaacca |
134 |
Q |
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| T |
51159577 |
actgttgattttccacttccactttctccaacca |
51159544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 36288587 - 36288551
Alignment:
| Q |
98 |
ataactgttgattttccactgccactttctccaacca |
134 |
Q |
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| T |
36288587 |
ataactgttgattttccacttccactttctcctacca |
36288551 |
T |
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