View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11101_low_3 (Length: 486)
Name: NF11101_low_3
Description: NF11101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11101_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 22 - 422
Target Start/End: Original strand, 2764193 - 2764593
Alignment:
| Q |
22 |
ggtcgtatatgcccttgtacttaaaaggagttgacaacacaatcccaaaattaacagctccacaagagcaactattggcaatgtttgttaccacatcatt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | |||||||| |
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| T |
2764193 |
ggtcgtatatgcccttgtacttaaaaggagttgacaacacaatcccaaaattaacagctccacgagagcaactatcagcaatgttctttgctacatcatt |
2764292 |
T |
|
| Q |
122 |
attcacatccatgttgaattggactcttctatggactttgtgatagtttccttgagagaaaggatttaagagtgtggtagcaagaaggctttggttattc |
221 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2764293 |
attcacatccatgttgaattggactcttttatcgactttgtgatagtttccttgagagaaaggatttaaaagtgtggtagcaagaaggctttggttattc |
2764392 |
T |
|
| Q |
222 |
ttgttgctgtaattaacaccaattgaaacagtgtcgtaagatacaggatgaaaatattcgttagggtttgacacaatgagggtaatatcccattcggcag |
321 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2764393 |
ttgttgttgtaattaacaccaattgaagcagtgtcgtaagatacaggatgaaaattttcgttagggtttgacacaatgagagtaatatcccattcggcag |
2764492 |
T |
|
| Q |
322 |
tgagtttagaaccgtttatattaagtgagttgatcgtagccaagtcgactctgaaccttggtgttctagggcccaggcttgcgatgaaagttatcaagac |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2764493 |
tgagtttagaaccgtttatattaagtgagttgatcgtagccaagtcgactcgaaaccttggtgttctagggcccaggcttgcgatgaaagttatcaagac |
2764592 |
T |
|
| Q |
422 |
a |
422 |
Q |
| |
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| |
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| T |
2764593 |
a |
2764593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 2759828 - 2760207
Alignment:
| Q |
22 |
ggtcgtatatgcccttgtacttaaaaggagttgacaacacaatcccaaaattaacagctccacaagagcaactattggcaatgtttgttaccacatcatt |
121 |
Q |
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||||||| ||||||| ||||| |||| ||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||| || | | |||||| |
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| T |
2759828 |
ggtcgtacctgcccttatacttgaaagaagttgacaacacaatcccaaaatcaacagctccgcgagagcaactatcggcaatgttcattgctatatcatt |
2759927 |
T |
|
| Q |
122 |
attcacatccatgttgaattggactcttctatggactttgtgatagtttccttgagagaaaggatttaagagtgtggtagcaagaaggctttggttattc |
221 |
Q |
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|||||||||||||||||||||||||||| ||| | ||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2759928 |
attcacatccatgttgaattggactcttttattgtctttgtgattgtttatttgagagaaagggtttaagagtgtggtagcaagaaggctttggttattc |
2760027 |
T |
|
| Q |
222 |
ttgttgctgtaattaacaccaattgaaacagtgtcgtaagatacaggatgaaaatattcgttagggtttgacacaatgagggtaatatcccattcggcag |
321 |
Q |
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| T |
2760028 |
ttgttgctgtaatgaacaccaatagaaacagtgttgtaagatacacgatgatagtcgtagttggggtttgacacgaagagggtaatatcccattcggcag |
2760127 |
T |
|
| Q |
322 |
tgagtttagaaccgtttatattaagtgagttgatcgtagccaagtcgactctgaaccttggtgttctagggcccaggctt |
401 |
Q |
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|||||||||||| ||||||||||||||| ||||| | ||| |||||||||| ||| |||| || |||||||||| |||| |
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| T |
2760128 |
tgagtttagaacagtttatattaagtgacttgatggaagctaagtcgactccaaacattggagtactagggcccaagctt |
2760207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 2769082 - 2769378
Alignment:
| Q |
22 |
ggtcgtatatgcccttgtacttaaaaggagttgacaacacaatcccaaaattaacagctccacaagagcaactattggcaatgtttgttaccacatcatt |
121 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||||| |||||||||||| ||||||||||| | ||||||||||| ||||||||||| |||||||||||| |
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| T |
2769082 |
ggtcgtacctgcccttgtacttgaaagaagttgacaccacaatcccaaagttaacagctccgcgagagcaactatcggcaatgtttgctaccacatcatt |
2769181 |
T |
|
| Q |
122 |
attcacatccatgttgaattggactcttctatggactttgtgatagtttccttgagagaaaggatttaagagtgtggtagcaagaaggctttggttattc |
221 |
Q |
| |
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|||||||||||||||||||||||||||| ||| | | || |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
2769182 |
attcacatccatgttgaattggactcttttattcgcatcc--at-gtttccttgagagaaagggtttaagagtgtggtagcaagaaggctatggttattc |
2769278 |
T |
|
| Q |
222 |
ttgttgctgtaattaacaccaattgaaacagtgtcgtaagatacaggatgaaaatattcgttagggtttgacacaatgagggtaatatcccattcggcag |
321 |
Q |
| |
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|||||| ||||| |||||||||| ||||||||||||||||||||||||||| | | | ||| ||||||||||| |||||||| |||||||||||||| |
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| T |
2769279 |
ttgttgatgtaactaacaccaatagaaacagtgtcgtaagatacaggatgatagtcgtagttggggtttgacacgtagagggtaacatcccattcggcag |
2769378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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