View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11101_low_4 (Length: 466)

Name: NF11101_low_4
Description: NF11101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11101_low_4
NF11101_low_4
[»] chr4 (3 HSPs)
chr4 (1-462)||(25840204-25840665)
chr4 (411-452)||(12706298-12706339)
chr4 (411-452)||(53763707-53763748)
[»] chr2 (3 HSPs)
chr2 (411-449)||(7438576-7438614)
chr2 (411-452)||(37468161-37468202)
chr2 (411-455)||(36763416-36763460)
[»] chr3 (4 HSPs)
chr3 (411-452)||(49886797-49886838)
chr3 (411-454)||(32187149-32187192)
chr3 (411-441)||(41448209-41448239)
chr3 (411-448)||(52963342-52963379)
[»] chr5 (1 HSPs)
chr5 (411-454)||(1293106-1293149)
[»] chr1 (3 HSPs)
chr1 (411-454)||(33076127-33076170)
chr1 (411-448)||(49020430-49020467)
chr1 (411-455)||(40605317-40605361)
[»] chr8 (2 HSPs)
chr8 (411-449)||(41955937-41955975)
chr8 (410-462)||(30243924-30243975)
[»] chr7 (2 HSPs)
chr7 (409-454)||(17002342-17002387)
chr7 (411-451)||(40077390-40077430)
[»] chr6 (1 HSPs)
chr6 (411-443)||(10557417-10557449)


Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 25840204 - 25840665
Alignment:
Q  1 tttctaatcgatgtgagaataaccactaggcactaacatttgaattctaaaaatgttcctctcaaatctgagtcacccacataactacacttgatccacg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25840204 tttctaatcgatgtgagaataaccactaagcactaacatttgaattctaaaaatgttcctctcaaatgtgagtcacccacataactacacttgatccacg 25840303  T
Q  101 ttccgctctaggatctcaattatgctccccgaccaaatagaaccaaagttatgatatgacttgttaggagtctcgggagtagcaatgagttaaacatcca 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25840304 ttccgttctaggatctcaattatgctccccgaccaaatagaaccaaagttatgatatgacttgttaggagtctcgggagtagcaatgagttaaacatcca 25840403  T
Q  201 caagtcctaaaactttgacatcaaaatcttaaggtttnnnnnnncgataaagtaacacactctaattgcagaaaaactcgtgccccaatatatcaaatgt 300  Q
     |||||||||||||||| |||||||||||||||||||       ||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||    
T  25840404 gaagtcctaaaactttggcatcaaaatcttaaggtttaaaaaaacgataaagtaacacactttaagtgtagaaaaactcgtgtcccaatatatcaaatgt 25840503  T
Q  301 ttattcagccttttatatcatattagctgtaattacaaaccataattgtaatttattttatgagactacctacttgaaaggactctgataatatgtgtta 400  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  25840504 ttattcggccttttatatcatattagctgtaattacaaaccataattgtaatttattttatgagactacctacttgaaaggacactaataatatgtgtta 25840603  T
Q  401 tataccctaaatatttgtacaaccatttttaaacaacttttatgacaaccttcttctctctc 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25840604 tataccctaaatatttgtacaaccatttttaaacaacttttatgacaaccttcttttctctc 25840665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 452
Target Start/End: Complemental strand, 12706339 - 12706298
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaacctt 452  Q
    ||||||||||||||| |||||||||  |||||||||||||||    
T  12706339 atatttgtacaaccaattttaaacattttttatgacaacctt 12706298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 452
Target Start/End: Original strand, 53763707 - 53763748
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaacctt 452  Q
    |||||||||||||| ||||||||||||||||  |||||||||    
T  53763707 atatttgtacaaccctttttaaacaacttttgggacaacctt 53763748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 7438576 - 7438614
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaac 449  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  7438576 atatttgaacaaccatttttaaacaacttttatgacaac 7438614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 452
Target Start/End: Original strand, 37468161 - 37468202
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaacctt 452  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||    
T  37468161 atatttgtacaaccaatttgaaacaacttttgtgacaacctt 37468202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 36763416 - 36763460
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaaccttctt 455  Q
    ||||||| |||||||||| | ||||| ||||||||||||||||||    
T  36763416 atatttgaacaaccatttgttaacaatttttatgacaaccttctt 36763460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 452
Target Start/End: Complemental strand, 49886838 - 49886797
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaacctt 452  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  49886838 atatttgtacaactatttttaaacaacttttaggacaacctt 49886797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 454
Target Start/End: Original strand, 32187149 - 32187192
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaaccttct 454  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  32187149 atatttgtacaaccattttgtgacaacttttatgacaaccttct 32187192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Complemental strand, 41448239 - 41448209
Alignment:
Q  411 atatttgtacaaccatttttaaacaactttt 441  Q
    |||||||||||||||||||||||||||||||    
T  41448239 atatttgtacaaccatttttaaacaactttt 41448209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 52963379 - 52963342
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaa 448  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  52963379 atatttgtacaaccattttttaacaacttttgtgacaa 52963342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 454
Target Start/End: Complemental strand, 1293149 - 1293106
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaaccttct 454  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||    
T  1293149 atatttgtacaaccattttttaacaacttttgtgacaactttct 1293106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 454
Target Start/End: Original strand, 33076127 - 33076170
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaaccttct 454  Q
    |||||||||||||||||||  |||||||||||||||||| ||||    
T  33076127 atatttgtacaaccattttctaacaacttttatgacaactttct 33076170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 49020467 - 49020430
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaa 448  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  49020467 atatttgtacaaccattttttaacaacttttgtgacaa 49020430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 40605317 - 40605361
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaaccttctt 455  Q
    ||||||| ||||||||||   ||||||||||||||||||||||||    
T  40605317 atatttgaacaaccatttgctaacaacttttatgacaaccttctt 40605361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 41955937 - 41955975
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaac 449  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  41955937 atatttgtataaccattttttaacaacttttatgacaac 41955975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 462
Target Start/End: Original strand, 30243924 - 30243975
Alignment:
Q  410 aatatttgtacaaccatttttaaacaacttttatgacaaccttcttctctctc 462  Q
    |||||||||||||||| ||||||||||||||| | |||| ||| |||||||||    
T  30243924 aatatttgtacaaccaattttaaacaacttttgtaacaatctt-ttctctctc 30243975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 17002342 - 17002387
Alignment:
Q  409 aaatatttgtacaaccatttttaaacaacttttatgacaaccttct 454  Q
    ||||||||| |||||||||||| |||||||||||||| ||| ||||    
T  17002342 aaatatttgaacaaccattttttaacaacttttatgataactttct 17002387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 451
Target Start/End: Complemental strand, 40077430 - 40077390
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttatgacaacct 451  Q
    ||||||| |||||||||| | ||||||||||||||||||||    
T  40077430 atatttgaacaaccatttgttaacaacttttatgacaacct 40077390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 443
Target Start/End: Original strand, 10557417 - 10557449
Alignment:
Q  411 atatttgtacaaccatttttaaacaacttttat 443  Q
    ||||||||||||||||||||| |||||||||||    
T  10557417 atatttgtacaaccatttttatacaacttttat 10557449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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