View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11101_low_6 (Length: 384)
Name: NF11101_low_6
Description: NF11101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11101_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 169 - 313
Target Start/End: Original strand, 6444363 - 6444515
Alignment:
| Q |
169 |
tagttcttctgtgtgaaaccagtttgcactgcaatgtccactgtgacatttccaacaaacaaacactgatcgtaggcacatgat----tttctacttaga |
264 |
Q |
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| T |
6444363 |
tagttcttgtgtgtgaaaccagtttgcactgcaatgtccactgtgacatttccaacaaacaaacactgatcgtatgcacatgattttctttctacttaga |
6444462 |
T |
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| Q |
265 |
gagtggtcctgtccttttt----cacacccatgtagtccttgcaatgttccat |
313 |
Q |
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| T |
6444463 |
gagtggtcctgtcctttgtcacacacacacatgtagtccttgcaatgttccat |
6444515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 6444259 - 6444349
Alignment:
| Q |
36 |
taatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtggtcacgcaacatgat |
135 |
Q |
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| T |
6444259 |
taatcttagattatttttcacctcctacttggtggcggg---------------ttgagaagaacaggaaaatattattttagtggtcacgcaacatgat |
6444343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 6444574 - 6444633
Alignment:
| Q |
319 |
ccactctgcttcattatattgctgttgag-ttacaccttctcttccctttatctctgctg |
377 |
Q |
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| T |
6444574 |
ccactctgcttcattatattgctgttgagtttacaccttctcttccctttatgtctgctg |
6444633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 29731343 - 29731252
Alignment:
| Q |
25 |
cataacacaactaatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtg |
120 |
Q |
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| T |
29731343 |
cataacacaattaatcatggattatttctcacctcctccttggtggcggggcctg----aatgggttgagaagaacagaaaaatattattttagtg |
29731252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 6653707 - 6653800
Alignment:
| Q |
27 |
taacacaactaatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtggtca |
124 |
Q |
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| T |
6653707 |
taacacaattaatcatggattatttttcacctcctccttagtggcggggcc----tgaatgggttgagaagaactgaaaaatattattttaatggtca |
6653800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 6734107 - 6734200
Alignment:
| Q |
27 |
taacacaactaatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtggtca |
124 |
Q |
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| T |
6734107 |
taacacaattaatcatggattatttttcacctcctcctttgtggcggggcc----tgaatgggttgagaagaactgaaaaatattattttaatggtca |
6734200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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