View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11101_low_9 (Length: 262)
Name: NF11101_low_9
Description: NF11101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11101_low_9 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 20507226 - 20506981
Alignment:
| Q |
1 |
gatgtgattattaattggtggtatttgcacgacatataagttgtgcactttagcattcattcatgctactttgttggatgaagttacgttctactattga |
100 |
Q |
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| T |
20507226 |
gatgtgattattaatttgtggtatttgcacgacatataagttgtgcactttagcattcattcatgctactttgttggatgaacttacgttctactattga |
20507127 |
T |
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| Q |
101 |
ttaaatttagacataaattaatatagttgttatttaatttggttttcttaaaccttcaaggattatggaattcatcgagacatcaggggcaataactgtt |
200 |
Q |
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| T |
20507126 |
ttagatttagacataaattaatatagttgttatttaatttggttttcttaaacctttaagaattatggaattcatcgagacatctggggcaataatcgtt |
20507027 |
T |
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| Q |
201 |
gaagagagttagtgactgcgacatgacctaactattttgatcatat |
246 |
Q |
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| T |
20507026 |
gaagagagttagtgactgagatataacctaactattttgatcatat |
20506981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 8836577 - 8836708
Alignment:
| Q |
87 |
cgttctactattgattaaatttagacataaattaat-atagttgttatttaatttggttttcttaaaccttcaaggattatggaattcatcgagacatca |
185 |
Q |
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| T |
8836577 |
cgttctactattgattatatttagacataaactaatgatagttcttacttagtttgatgttcttaaacttttaaggattatgggcttcaccgagatacca |
8836676 |
T |
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| Q |
186 |
g-gggcaataactgttgaagagagttagtgac |
216 |
Q |
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| T |
8836677 |
gagggcaataatggttgaagagagttagtgac |
8836708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 27480654 - 27480735
Alignment:
| Q |
88 |
gttctactattgattaaatttagacataaattaat-atagttgttatttaatttggttttcttaaaccttcaaggattatgg |
168 |
Q |
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| T |
27480654 |
gttctagtgttgattagatttagacataaattaatgatagttgttgcttactttgacgttcttaaaccttcaagggttatgg |
27480735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 36921550 - 36921478
Alignment:
| Q |
95 |
tattgattaaatttagacataaattaat-atagttgttatttaatttggttttcttaaaccttcaaggattat |
166 |
Q |
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| T |
36921550 |
tattgattagatttagacataaactaatgataattgttatttattttggcattcttaaacattcaagggttat |
36921478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 14367 - 14263
Alignment:
| Q |
87 |
cgttctactatt-gattaaatttagacataaattaat-atagtt--gttatttaatttggttttcttaaaccttcaaggattatggaattcatcgagaca |
182 |
Q |
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|||||||||||| ||||| || || ||||||| |||| |||||| |||| |||| ||||| ||||||||||||| ||| |||||| ||||| |||||| |
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| T |
14367 |
cgttctactatttgattagatatatacataaactaatgatagttttgttacttaacttggtgttcttaaaccttcgagggttatgggcttcattgagaca |
14268 |
T |
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| Q |
183 |
tcagg |
187 |
Q |
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||||| |
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| T |
14267 |
tcagg |
14263 |
T |
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