View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11102_high_15 (Length: 214)
Name: NF11102_high_15
Description: NF11102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11102_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 49068507 - 49068693
Alignment:
| Q |
11 |
aagcagagacaaagcagcatgcacaaagtcactacccttaagcctatactttgttaaatcaatggaagttgaagctggtggtgaaggccataatcccttg |
110 |
Q |
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| T |
49068507 |
aagcaaagacaaagcagcatgcacaaagtcactacccttaagcctatactttgttaaatcaatggaagttgaagctggtggtgaaggccataatcccttg |
49068606 |
T |
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| Q |
111 |
gttgttacaattccatagtgtctctttttatcagttcctgtataactatctgtgaaggttgaaaagaaacaattgaaaccacatatt |
197 |
Q |
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| T |
49068607 |
gttgttacaattccatagtgtctctttttatcagttcctgtataactatctgtgaaggttgaaaagaaacaattgaaaccacatatt |
49068693 |
T |
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Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 49075538 - 49075352
Alignment:
| Q |
11 |
aagcagagacaaagcagcatgcacaaagtcactacccttaagcctatactttgttaaatcaatggaagttgaagctggtggtgaaggccataatcccttg |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49075538 |
aagcaaagacaaagcagcatgcacaaagtcactacccttaagcctatactttgttaaatcaatggaagttgaagctggtggtgaaggccataatcccttg |
49075439 |
T |
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| Q |
111 |
gttgttacaattccatagtgtctctttttatcagttcctgtataactatctgtgaaggttgaaaagaaacaattgaaaccacatatt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49075438 |
gttgttacaattccatagtgtctctttttatcagttcctgtataactatctgtgaaggttgaaaagaaacaattgaaaccacatatt |
49075352 |
T |
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