View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11102_high_2 (Length: 484)
Name: NF11102_high_2
Description: NF11102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11102_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 44038401 - 44038810
Alignment:
| Q |
18 |
caagcaaccagaaatatttgactaaacacacactaagatggtatgaataccttccagcttaattagttgtacagtgtttaaatttaaccataaaaatgtc |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44038401 |
caagcaaccagaaatatttgactaaacagacactaagatggtatgaataccttccagcttaattagttgtacagtgtttgaatttaaccataaaaatgtt |
44038500 |
T |
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| Q |
118 |
tataagttttgagtaagagttttatcatcatatggttttacctaactaagaaatatgtctctacatttgtacaaagaatctggatttgaatt-catttcg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||| ||||||| |
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| T |
44038501 |
tataagttttgagtaagagttttatcatcatatggttttacctaactaagaaatctgtctctacatttgcacaaagaacccggatttgaatttcatttcg |
44038600 |
T |
|
| Q |
217 |
ctaaatttcccttaaagcaactaaaatgctttaagttatcgcgatttagacctgtaatgtaaatcatatcatttgtaatggtgtagtccggtgcttcccc |
316 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44038601 |
ctaaatttcccttaacgcaactaaaatgctttaagttatcgcgatttagacctgtaatgtaaatcatatcatttgtaatggtgtagtccggtgcttcccc |
44038700 |
T |
|
| Q |
317 |
ttgcagtagcttgaggttggcatgcctattaggtaaaactattattaggtgaaagtgtttccattatcttaagagaaaattttcttacacaaaatccgac |
416 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44038701 |
ttgcagtagattgaggttggcatgcctattaggtaaaactattattaggtgaaagtgtttccattatcttaagagaaaattttcttacacaaaatccgac |
44038800 |
T |
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| Q |
417 |
atcaataccg |
426 |
Q |
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| T |
44038801 |
atcaataccg |
44038810 |
T |
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