View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11102_low_10 (Length: 255)
Name: NF11102_low_10
Description: NF11102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11102_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27770016 - 27769785
Alignment:
| Q |
1 |
ttactaccactttgattaataattatgtccccccttctccaaattattttggacaatttagcctaaatatttttgttatcaagatcggatggttaatatt |
100 |
Q |
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| T |
27770016 |
ttactaccactttgattaataattatgtccccccttctccaaattattttggacaatttagcctaaatatttttgttatcaagatcggatggttaatatt |
27769917 |
T |
|
| Q |
101 |
ttaagttctgtattttatattttaaaagaaaaataaaatatgcatatttgtaaagtgcctatctcaattgaatcgtcac---tgtatttaagtgcgtgaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| || ||||||||||||||| |
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| T |
27769916 |
ttaagttctgtattttatattttaaaagaaaaataaaatatgcatatttgtaaagtgtctttctcaattaaatcgtcactgatgcatttaagtgcgtgaa |
27769817 |
T |
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| Q |
198 |
tgc-aaaaaattaaggacttcacaatttcgaa |
228 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
27769816 |
tgcaaaaaaattaaggacttcacaatttcgaa |
27769785 |
T |
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