View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11102_low_11 (Length: 249)
Name: NF11102_low_11
Description: NF11102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11102_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 8846324 - 8846579
Alignment:
| Q |
5 |
caccttcctatgacggtatattttctttgacatttaacaaattggttgcaaatagtgatggaa-----------taggcttttgccaatcattgaaaact |
93 |
Q |
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| T |
8846324 |
caccttcctatgacggtatattttctttaacatttaacaaattggttgcaaatagtgatggaaataaagatgcataggcttttgccaatcattgaaaact |
8846423 |
T |
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| Q |
94 |
tcttatattgatgttgcaggtgtgacacatgtgggaggagatatgtttgagagtgttcctgatggagatgtcttatttttgaaggtgaattcaagctttt |
193 |
Q |
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| T |
8846424 |
tcttatattgatgttgcaggtgtgacacatgtgggaggagatatgtttgagagtgttcctgatggagatgtcatatttttgaaggtgaattcaagctttt |
8846523 |
T |
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| Q |
194 |
atattaataatctatttagtttttctttaacatttaatagttctttcaaacgattc |
249 |
Q |
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| T |
8846524 |
atattaataatctatttaatttttctttaacatttaatagttctttcaaacgattc |
8846579 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 49098393 - 49098341
Alignment:
| Q |
111 |
aggtgtgacacatgtgggaggagatatgtttgagagtgttcctgatggagatg |
163 |
Q |
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| T |
49098393 |
aggtgtggaacatgtggggggagatatgtttgagagcgttcctgctggggatg |
49098341 |
T |
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