View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11102_low_12 (Length: 241)
Name: NF11102_low_12
Description: NF11102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11102_low_12 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 39031246 - 39031469
Alignment:
| Q |
2 |
tgattggtcaatgtcatcaatgtcaccccactccatatcatccaagtactatatgtgatgtgggtacgaaagtaccatcttttttcaaagcaagcacacc |
101 |
Q |
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| T |
39031246 |
tgattgatcagtgtcaccaatgtcaccccactctatgtcatccaaatactatatgtgatgtgggtatgaaagtaccatcttttttcaaagcaagcacatc |
39031345 |
T |
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| Q |
102 |
ccataaatcaattaataatctctatcttttaacaaagtgt--ttgttaatgatgcacttcaaaagtaatgtaatgttaccttcacctcgtgaccccatct |
199 |
Q |
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| T |
39031346 |
ccataaatcaactaataatctctatcttttaacaaagtgtcattgttaatgatgcacttcaaaagtaatgtaatgttaccttcacctcgtgaccccatct |
39031445 |
T |
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| Q |
200 |
ttctctactcccgcatacacaatg |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
39031446 |
ttctctactcccgcatacacaatg |
39031469 |
T |
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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 49746 - 49700
Alignment:
| Q |
2 |
tgattggtcaatgtcatcaatgtcaccccactccatatcatccaagt |
48 |
Q |
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| T |
49746 |
tgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagt |
49700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33841685 - 33841733
Alignment:
| Q |
1 |
ctgattggtcaatgtcatcaatgtcaccccactccatatcatccaagta |
49 |
Q |
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| T |
33841685 |
ctgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagta |
33841733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 45213895 - 45213927
Alignment:
| Q |
2 |
tgattggtcaatgtcatcaatgtcaccccactc |
34 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
45213895 |
tgattggtcaatgtcatcaatgtcacccaactc |
45213927 |
T |
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