View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11102_low_14 (Length: 227)
Name: NF11102_low_14
Description: NF11102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11102_low_14 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 43879080 - 43879278
Alignment:
| Q |
14 |
agatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctattta |
113 |
Q |
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| T |
43879080 |
agatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctattta |
43879179 |
T |
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| Q |
114 |
tttagatattgtcgacaagtttttcactgacatgcactcagaattgtctgtttcacaatcctctgtcagcatcaaacgatcaaagtcaaagggaagatt |
212 |
Q |
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| T |
43879180 |
tttagatattgtcgacaagtttttcactgacatgcactcagaattgtctgtttcacaatcctctgtcagcatcaaacgatcaaagtcaaagggaagatt |
43879278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 7699 - 7574
Alignment:
| Q |
14 |
agatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctattta |
113 |
Q |
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||||||||||||| || |||| |||||||||||| ||||||| |||||||| || ||||||||||||||||| |||||||| || || ||||| |||| |
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| T |
7699 |
agatgaaggaattagatatgatggattcaggtgatcttgaacacgtactagacatcgaagaagcacttcactactattctcgccttaaaagtccggttta |
7600 |
T |
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| Q |
114 |
tttagatattgtcgacaagtttttca |
139 |
Q |
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| T |
7599 |
tctagatattgtgaacaggtttttca |
7574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 13283 - 13158
Alignment:
| Q |
14 |
agatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctattta |
113 |
Q |
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|||||||| || |||| |||| || ||||||||| ||||||| || ||||| |||||||||||||||||||| |||||||| || || ||||| |||| |
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| T |
13283 |
agatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacatagaagaagcacttcactactattctcgccttaaaagtccagttta |
13184 |
T |
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| Q |
114 |
tttagatattgtcgacaagtttttca |
139 |
Q |
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| | |||||||| |||| |||||||| |
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| T |
13183 |
tctcgatattgtggacaggtttttca |
13158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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