View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11102_low_4 (Length: 419)
Name: NF11102_low_4
Description: NF11102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11102_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 8083748 - 8083559
Alignment:
| Q |
19 |
cacagacttaagtttttatcatgtaccttatccctttgtttg-cgggtacctga-----gatcaaattcacaaataaatttgaaattttggagggagaaa |
112 |
Q |
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| T |
8083748 |
cacaaacttaaatttttgtcatgtaccttatccctttgtttgtcgggtacctgaagagagatcaaattcacaaataaatttgaaattttgaagggagaaa |
8083649 |
T |
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| Q |
113 |
gacacgttagtcc-tctccacatttttctgtttggttgtcctttcatgcatttttcgtatgtgctatggattctgttacatacacttctt |
201 |
Q |
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| T |
8083648 |
gacacgttagtccctctccacatttttctgtttggttgtcctttcatgcatttttcgtatgtgctatggattctgttacatacacttctt |
8083559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 8083391 - 8083277
Alignment:
| Q |
193 |
acacttctttcactgctatttcatttcaccaacaaatgcaatacctcgctcttttagcactcgcttcttcaattccaccttacatattaggcacaacaaa |
292 |
Q |
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| T |
8083391 |
acacttctttcactgctatttcatttcaccaacaaatgcaatacctcgctcttttagcactcgcttcttcaattccaccttacatattaggcacaacaaa |
8083292 |
T |
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| Q |
293 |
tgttgaaactattcc |
307 |
Q |
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| T |
8083291 |
tgttgaaactattcc |
8083277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 306 - 401
Target Start/End: Complemental strand, 8083134 - 8083036
Alignment:
| Q |
306 |
ccattaataattcatactagtttaaatttcctttttctttaattatttttcatttggcagttaaatcttgtatt---agaatataatgaagggatgaac |
401 |
Q |
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| T |
8083134 |
ccattaataattcatactagtttaaatttcctttttctttaattatttttcatttggcagttaaatcttgtattaaaagaatataatgaagggatgaac |
8083036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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