View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11102_low_5 (Length: 414)
Name: NF11102_low_5
Description: NF11102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11102_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 111 - 395
Target Start/End: Complemental strand, 32184003 - 32183716
Alignment:
| Q |
111 |
gttagcttggttcacatacctaataatccaaacatacaaaatataaatcaaccatagtggaga---gtaaaaataaatagttagctagctagcttggttc |
207 |
Q |
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| T |
32184003 |
gttagcttggttcacatacctaataatccaaacatacaaaatataaatcaaccataatgcagaaaagaaaaaaaaaatagttatctagctagcttggttc |
32183904 |
T |
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| Q |
208 |
aaccattgcatagcttggttgagttcatcaaccaaagcaataggcagcagaacaagacctttgttttcaagtagctgacatgttgctgctgaatttactt |
307 |
Q |
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| T |
32183903 |
aaccattgcatagcctggttcagttcatcaaccaaagcaataggcagcagaacaagacctttgttttcaagtagctgacatgttgctgctgaatttactt |
32183804 |
T |
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| Q |
308 |
caagtagattccccattatctcttcaagaggctcattcaacatctgttcctttatataatgtccataaccctgtaaataaaacatagc |
395 |
Q |
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| T |
32183803 |
caagtagattccccattatctcttcaagaggctcattcaacacctgttcctttatataatgcccataaccctgtaaattaaacatagc |
32183716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 32184049 - 32184000
Alignment:
| Q |
17 |
agaaacagtaacacacacgccacctttgagcaccatagattttcaagagtta |
68 |
Q |
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| T |
32184049 |
agaaacagtaacacacac--cacctctgagtaccatagattttcaagagtta |
32184000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 273 - 395
Target Start/End: Original strand, 33635647 - 33635769
Alignment:
| Q |
273 |
ttcaagtagctgacatgttgctgctgaatttacttcaagtagattccccattatctcttcaagaggctcattcaacatctgttcctttatataatgtcca |
372 |
Q |
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| T |
33635647 |
ttcaagtagctaacttgctactgctgaatgctcttcaaattgtttcctcattatctcttcaagagactcattcaacttttgttcctttatatactgccca |
33635746 |
T |
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| Q |
373 |
taaccctgtaaataaaacatagc |
395 |
Q |
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| T |
33635747 |
taaccctgtaaataaaacatagc |
33635769 |
T |
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